Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10805 ATGGCTGAAAATGGGTGTGCACCCTTTTCGTACCTTGCCTCAGAGAATGACTCCTTGGACCAACACCCAGAGGGTTTCACCACTCTCTCTAACAACTCCTTTGTCTTAGGCGATTCAAGTAAAGGAAACATGACCTCTCTCTCTAAAAAGAATTTGGATCTAGTGTCATCACCAACACCGCCCTCCTCCTCCTCTAACGGGGAGTTCCACATCCTTTCCTGCAAAACCAAGGAGGAGAAGGGCGTAACCACACCCTCCAACACTAAGGGACGAAAGGGTAGGCCCCGTGGCTCTAAGAACAAACCCAAGCCACCCATCATAATCAAGGAAGATAGCAACCAGCTTGTTAAACCAATCATCATTGAAATATCTGCTGGAAATGACATTGTTGAGGCCATCATCAAGTTCGCTTCCCGTCATTGTGTCGGTATCTCAGTGCTAAGTTGTTCTGGTTCTATCTCTAATGTTACCTTTCGCCACCCTCTTTCTGGTATTGCTCCTCCTCTCTCTTTTAATGGGAGCTTCAACATTTTATCTCTCCTAGGTACTTACATAAGTGGTGTTTTTACTCCACTCACCCGTACCCTCGCTTGTTCCTCCTTTTTCATTAACCTCTCAGGGCCACAGAGCAAAGTATTTGGTGGGATTGTTGGAGGAAAGGTTGTGGCTGCAAATAATGTGGTTGTTGTGGGTTCAATGTTCAAGAAGCTTGAGCACCACAAGGTACGCATCATCAATGGAATACTAGTTGAAGAAGGTGACATCACATATGTGCCTGTCGATAATGTCGTTGCAAGCAACCCTAGTGGCATCACCAACACGATTTCCATTGCTGCTAACGAACACCAGATATAA 855 0.4573 MAENGCAPFSYLASENDSLDQHPEGFTTLSNNSFVLGDSSKGNMTSLSKKNLDLVSSPTPPSSSSNGEFHILSCKTKEEKGVTTPSNTKGRKGRPRGSKNKPKPPIIIKEDSNQLVKPIIIEISAGNDIVEAIIKFASRHCVGISVLSCSGSISNVTFRHPLSGIAPPLSFNGSFNILSLLGTYISGVFTPLTRTLACSSFFINLSGPQSKVFGGIVGGKVVAANNVVVVGSMFKKLEHHKVRIINGILVEEGDITYVPVDNVVASNPSGITNTISIAANEHQI. 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10805 284 Pfam Plants and Prokaryotes Conserved (PCC) domain 117 231 IPR005175 -
Seca3g10805 284 Gene3D - 116 245 - -
Seca3g10805 284 SUPERFAMILY AF0104/ALDC/Ptd012-like 116 233 - -
Seca3g10805 284 MobiDBLite consensus disorder prediction 74 106 - -
Seca3g10805 284 CDD DUF296 117 219 IPR005175 -
Seca3g10805 284 ProSiteProfiles PPC domain profile profile. 112 254 IPR005175 -
Seca3g10805 284 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 68 242 IPR014476 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10805 Seca-Chr3 254405032 254405886 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10805 92 242 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 39.744 2.18e-34 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10805 - - adu:107463674 139.043