Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10803 ATGGAAGCTAATATTGACCCTTCTGTGCAAGGGAATTACCCTGCTTTCCCTTTTATTGCTGAGAATATAGATGGCCACAATGCAAAGTCTGGTTCTGTCACGGTTTCTGAATCCATCTTCTCTGCTCCAGGTAACAATCCTCTTCCTGGTGTATATAATTCTCAGCAGCAGCAGCAAGAGTTTGGAGTAGTGGATGAGAAACCCCAAGTTATCAACCCCCAGTTTCTGTTAAACCAGAATCAAGCTCATTTCTCAGAGAACCCCTCTTTCTTTGTACCATTACCATACCCTCAAATGCAAGAGCAACAAGTTTTCTCTCAGCATCAAGCAAAACGCCCCCTTTTTGACACATCTGGGCTCAATTATCAAGTTCCAAGGTCACCCCTTTTGGATTCTGGGCAAGAGGTGTTTGCTAGGAGGCAGCAAACACAGCTTCCATTGTTTCCTCATCATCTACAACAACAGCAATCATTGGTTGTACCATCTGCAAAACAGCAGAAGCAGCTTCAGCAGAGTATATTTGATCAGCTGTACAAGATTGCTGATATGATAGAAGCTGGTAATCAGGTTCATGCGCAAGGGATATTGGCGCGGCTCAATCAGCAGCTCTCCCCAATTGGTAAGCCTTTTCAGAGGGCTGCTTTCTACATGAAGGAGGCCTTGCAGTTAATGCTTCATTCAAACATTCACAATTTTTTGGATTTCTCACCTATAAGTTTCATTTTCAAAATTGGAGCTTATAAGTCCTTTTCTGAGATATCACCAGTTCTACAGTTTGCCAATTTTACTTCCAATCAAGCCCTCATTGAAGCTTTGGAAAGGTTTGATCGAATTCATATTGTTGATTTTGATATTGGTTTTGGAGTGCAATGGTCTTCTTTTATGCAAGAGCTTGCCTTAAGAAGTAATGGTACACCTTCACTTAAAGTTACTGCTGTTGTTTCACCTTCAACTTGCAATGAGATTGAGCTCAATTTTACCAGAGAAAATTTGATACAATATGCAAAAGACATCAACATGTCATTTGAGCTCAATGTTTTGAACATTGAATCATTGAATTCTCCTTCTTGTCCATTGACTGGTCATTTCTTTGATAATGAGGCAATTGTTGTGGATATGCCAGTTTCATGTTTCACAAATTATCCATCATTGTTTCCTTTGGTCCTTCACTTTGTAAAGCAGCTTAGGCCAAAAATTGTGGTCACTTTGGATAGAAATTGTGATCGAATTGATGTGCCACTTCCTACCAATGTAGTCCATGTTCTTCAAAGTTATTCAGCCTTGCTTGAATCACTGGATGCTGTAAATGTGAACCTGGATGTCCTCCAGAAGATTGAGAGGCATTTCATCCAACCAGCCATAAAGAAAATTATAATGGGTCACCATCATTCACAAGACAAATTACCTCCATGGAGGACCCTTTTTCTTCAATCTGGATTCTCTCCCTTCACATTCAGTAACTTCACAGAAGCTCAAGCTGAGTGTTTAGTGCAAAGGGCACCTGTGCGAGGATTTCAAGTGGAAAGAAAGCCTTCCTCTCTTGTTCTATGCTGGCAGCGGAAAGAACTGATCTCAGTTTCAACTTGGAGATGCTGA 1596 0.4079 MEANIDPSVQGNYPAFPFIAENIDGHNAKSGSVTVSESIFSAPGNNPLPGVYNSQQQQQEFGVVDEKPQVINPQFLLNQNQAHFSENPSFFVPLPYPQMQEQQVFSQHQAKRPLFDTSGLNYQVPRSPLLDSGQEVFARRQQTQLPLFPHHLQQQQSLVVPSAKQQKQLQQSIFDQLYKIADMIEAGNQVHAQGILARLNQQLSPIGKPFQRAAFYMKEALQLMLHSNIHNFLDFSPISFIFKIGAYKSFSEISPVLQFANFTSNQALIEALERFDRIHIVDFDIGFGVQWSSFMQELALRSNGTPSLKVTAVVSPSTCNEIELNFTRENLIQYAKDINMSFELNVLNIESLNSPSCPLTGHFFDNEAIVVDMPVSCFTNYPSLFPLVLHFVKQLRPKIVVTLDRNCDRIDVPLPTNVVHVLQSYSALLESLDAVNVNLDVLQKIERHFIQPAIKKIIMGHHHSQDKLPPWRTLFLQSGFSPFTFSNFTEAQAECLVQRAPVRGFQVERKPSSLVLCWQRKELISVSTWRC. 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10803 531 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 156 526 IPR005202 -
Seca3g10803 531 Pfam GRAS domain family 175 530 IPR005202 -
Seca3g10803 531 ProSiteProfiles GRAS family profile. 164 530 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10803 Seca-Chr3 254357098 254358722 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10803 161 531 GRAS Transcription Factor Family AT4G00150 54.278 7.16e-131 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca3g10803 GRAS 1.4e-89 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10803 - - gmx:100801785 856.284