Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10801 ATGGCTGAAAATAGGTGTGCACCATTTTTGTCCCTTGCATTAAAGAATAACTCATATGAAATTCCAACCACTCTTCCTGATAGCTCCTCTATCATATGTGGTGCAGGCATAGGAAACATGATCTCTCTCTCCAACAACCACAATTATGGAGAGCGCTACATCCTTCCCCGTGAAAACCAAGCAGAAGAAGGACGTAACTACACCCTCCAACTCCAAGGGACGAAAGGGGAGCCCACCTGGGCCATCATCGAGGTTGTTTGTCGTCATCGTGTTGGTATCACGATGCTAAGTGGTTCGGGTCCTATCACCGACGTTACCCTTTACCACCAATTATCCCATACTGCTCATACTTTCTCTATCAATGGAACCTTCAAAATTATATTTCTTGTTGGCACTTATATGAGTGGTCATTTTCCCCCACTCTCCATTTCCAACCATGTTTTTTTCTCCTTTGTCGTTCGCCTCCCAGGGCTCTTATGCCAGGTACTTGGTCGAGTTGTTGGAGGGAAGGTTATAGCTAGAAGCAGTGTGGTCTTCGTGGCCTCAATGTTCAAGAAGCTTGAGTAG 567 0.4568 MAENRCAPFLSLALKNNSYEIPTTLPDSSSIICGAGIGNMISLSNNHNYGERYILPRENQAEEGRNYTLQLQGTKGEPTWAIIEVVCRHRVGITMLSGSGPITDVTLYHQLSHTAHTFSINGTFKIIFLVGTYMSGHFPPLSISNHVFFSFVVRLPGLLCQVLGRVVGGKVIARSSVVFVASMFKKLE. 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10801 188 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 81 186 IPR014476 GO:0003680
Seca3g10801 188 Pfam Plants and Prokaryotes Conserved (PCC) domain 76 180 IPR005175 -
Seca3g10801 188 Gene3D - 75 186 - -
Seca3g10801 188 ProSiteProfiles PPC domain profile profile. 61 188 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10801 Seca-Chr3 254306165 254306833 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10801 83 184 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 33.333 1.15e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10801 - K01942 cam:101511090 83.5741