Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10798 ATGGAGAGCGCTACATCCTTCCCCATTAAAACCAAGCAGAAGAAGGACGTAATTACACCCTCCAACTCCAAGGGACGAAAGGGGAGGCCACCTGGGTCTAAGAACAAGCTAAAGGTACACATCCTAATCAAGGAGGACAACGATCAAAATCTCAAAACAATCATTATTGAAATCCCTACTGCAAATGATGTTGTTAAGGCCATCATTGAGGTCTCTTGTCGTCACTGTGTTGGTATCATGGTGCTAAGTGGTGCAGGTTTTGTCCCCGACGTTACCCTTTGCCACCCATTATCCTATATTGCTCATACTTTCTTTATCATCGGAACCTTCAAAATTATATCTCTTGCTGGCACTTATATGAGTGGTCATTTTTCCCCCACTGTCCCCTTCCAACCATGCTTGTTCCTCTTTTGTCTTTCGCTTCTCAGGGCCCTTATGCCAGGTACTTGA 450 0.4467 MESATSFPIKTKQKKDVITPSNSKGRKGRPPGSKNKLKVHILIKEDNDQNLKTIIIEIPTANDVVKAIIEVSCRHCVGIMVLSGAGFVPDVTLCHPLSYIAHTFFIIGTFKIISLAGTYMSGHFSPTVPFQPCLFLFCLSLLRALMPGT. 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10798 149 ProSiteProfiles PPC domain profile profile. 48 149 IPR005175 -
Seca3g10798 149 MobiDBLite consensus disorder prediction 1 16 - -
Seca3g10798 149 MobiDBLite consensus disorder prediction 1 34 - -
Seca3g10798 149 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 22 126 IPR014476 GO:0003680
Seca3g10798 149 Pfam Plants and Prokaryotes Conserved (PCC) domain 53 125 IPR005175 -
Seca3g10798 149 SUPERFAMILY AF0104/ALDC/Ptd012-like 50 124 - -
Seca3g10798 149 Gene3D - 50 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10798 Seca-Chr3 254299170 254299619 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10798 27 120 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 40.000 2.79e-18 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10798 - - lang:109328424 92.8189