Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10779 ATGATGGAGAAGCATAAGTGTAAGCTTTGTTCAAGGAACTTCTCTAATGGAAGAGCATTAGGGGGTCACATGAGGTCTCACATGATGAACCTACCGGTTCCTCCAAAACCGAACGAGTCACCACCAACGGTTCAACTCAGTTTCGAAGCCGAGTCAGCTTCATCTCCTTCATCCTATGGTCTCAGGGAGAATCCAAAGAAGAGTTTTCGATTTGCCGATCCTGAATTCTCGTTCGCCGGCGCGGCGGACGCCGGGTCAGTGATCCTCCAAGACAGAGAGAGCGAGACCGAGTCATCGAAGAATCCGACTCGGAGACGATCCAAACGGACTCGGACGAAACCGTGCGGCGAGAATAACAAGAACGAGTCAGCGAGTTCTGCATCGGACACAACCACAGAGGAAGACCTCGCGTTCTGTCTCATGTTGTTGTCTCGTGACAAGTGGAAGAGACAACGTGAGTTCATGGAGGAAGAAGAAGAAGAAAAGTACGAGGTACAAGAAGAGGATGATGAAGAGGAAGAAGAAGATGACAGCGACGATGAATCCGAGGAGCTGAAATCGTTGAAGACGAGGACACGAGGGAGGTACAAATGTGACACGTGTAACAAGATTTTTCGGTCATACCAAGCACTTGGTGGACACAGAGCGAGTCACAAGAAGATCAAGTTAGTGGAAGAATCTGAATCTGAGCATAAGAACAATAATGGTGGAGCTTCTTCTACTACTCCTGTGGTGGTTGCTGAGAAGAAAATTCATGAGTGCCCTGTTTGCTTCAGGGTATTTGCCTCTGGTCAAGCTCTTGGTGGACACAAGAGAACCCATGTTATAGGGTCAGCAACAGTAACAGCACCAACAATAATCAATGAGGTTCGAAGTTCACCAAAGGTTGGTGATAGTTTGATAGATCTCAATTTACCTGCTCCTATGGATGATGATGATGTCGAGGACTCTGCTGTTTCGGATGCAGAATTTGTCAAACCAGTTAGGCACTGA 993 0.4743 MMEKHKCKLCSRNFSNGRALGGHMRSHMMNLPVPPKPNESPPTVQLSFEAESASSPSSYGLRENPKKSFRFADPEFSFAGAADAGSVILQDRESETESSKNPTRRRSKRTRTKPCGENNKNESASSASDTTTEEDLAFCLMLLSRDKWKRQREFMEEEEEEKYEVQEEDDEEEEEDDSDDESEELKSLKTRTRGRYKCDTCNKIFRSYQALGGHRASHKKIKLVEESESEHKNNNGGASSTTPVVVAEKKIHECPVCFRVFASGQALGGHKRTHVIGSATVTAPTIINEVRSSPKVGDSLIDLNLPAPMDDDDVEDSAVSDAEFVKPVRH. 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10779 330 SMART c2h2final6 196 218 IPR013087 -
Seca3g10779 330 SMART c2h2final6 252 274 IPR013087 -
Seca3g10779 330 SMART c2h2final6 5 27 IPR013087 -
Seca3g10779 330 ProSitePatterns Zinc finger C2H2 type domain signature. 198 218 IPR013087 -
Seca3g10779 330 ProSitePatterns Zinc finger C2H2 type domain signature. 254 274 IPR013087 -
Seca3g10779 330 MobiDBLite consensus disorder prediction 308 330 - -
Seca3g10779 330 ProSiteProfiles Zinc finger C2H2 type domain profile. 5 32 IPR013087 -
Seca3g10779 330 SUPERFAMILY beta-beta-alpha zinc fingers 4 32 IPR036236 -
Seca3g10779 330 Coils Coil 155 191 - -
Seca3g10779 330 SUPERFAMILY beta-beta-alpha zinc fingers 195 274 IPR036236 -
Seca3g10779 330 MobiDBLite consensus disorder prediction 155 189 - -
Seca3g10779 330 ProSiteProfiles Zinc finger C2H2 type domain profile. 196 223 IPR013087 -
Seca3g10779 330 MobiDBLite consensus disorder prediction 83 132 - -
Seca3g10779 330 ProSiteProfiles Zinc finger C2H2 type domain profile. 252 274 IPR013087 -
Seca3g10779 330 MobiDBLite consensus disorder prediction 158 182 - -
Seca3g10779 330 ProSitePatterns Zinc finger C2H2 type domain signature. 7 27 IPR013087 -
Seca3g10779 330 MobiDBLite consensus disorder prediction 30 66 - -
Seca3g10779 330 Pfam C2H2-type zinc finger 252 274 - -
Seca3g10779 330 Pfam C2H2-type zinc finger 5 28 - -
Seca3g10779 330 Pfam C2H2-type zinc finger 195 220 - -
Seca3g10779 330 MobiDBLite consensus disorder prediction 117 132 - -
Seca3g10779 330 Gene3D Classic Zinc Finger 193 274 - -
Seca3g10779 330 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 2 326 IPR044303 GO:0006355
Seca3g10779 330 MobiDBLite consensus disorder prediction 42 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10779 Seca-Chr3 254082323 254083351 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10779 2 314 C2H2 Transcription Factor Family AT3G60580 44.478 1.73e-72 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca3g10779 zf-C2H2_6 6.7e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10779 - - aprc:113850450 365.155