Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10778 ATGGCTTTGATTGTGGATCAACAATCAAACTTCAAACACTTTTGTAAAATTTGCAAAAAAGGTTTTGGTTGTGGAAGAGCTCTAGGAGGACACATGAGGGCACATGGCATAGGTGATGAATCAGGGCACATGGATGATGATGACCCTGCAAGTGATTGGGAAGAAAGGCTAGGTGGTAATGTTCCACCAAGCAACAAACGCATGTATGCTCTAAGAACAAATCCAAATAGGCTAAAGAGCTGTAGGGTATGTGAGAATTGTGGTAAAGAGTTCTTATCTTGGAAATCCTTCCTTGAACATGGAAAATGCACTTCTGAAGATGCAGAGTCCCTTTCCCTTGTCTCTTCTCCAGGCTCCGACGCCGTCGCCGATGACGTCGGCCGGCGAGGTTGCGGTGGTTGGTCCAAAAGGAAAAGATCTTTGAGAACAAAAGTTGGAAGCTTTAACTATAATTGTCCTTCAAGCGAGGAAGAAGACTTAGCCAATTGTTTGATGATGTTGTCCAATGCCATTGTTGATCCTCTTGTGGCAGAGCCTGAAGAATCATGTGCCTCAGCTAGCAAAGATATTGAAGAAAGAAGAAACCCCATGAACTTCATTGCACCATTACCATACAGAGCCCCCATTGATCATAATAACAACAACAACAATAAGGCTAAAGGGGTAGCAAGCAGAGGCTTATTTGAATGCAAAGCATGCAAGAAAGTCTTCAACTCACACCAAGCATTAGGTGGTCACAGAGCAAGTCACAAAAAAGTTAAAGGCTGTTTTGCTGCAAGATTAGACAACATTGATGATAGTCTTGTTGAGGATGATGTCATAACACATGAAGAATTCTTCCCTACAAAATCAAACTCTACATTCCAATTTGATCATGGCTCTTCCAACCCCACATTGGGTTCTTCCTCAAAGAGAAAATCAAAGGTGCATGAATGCTCAATTTGTCATAGGAGTTTCTCTTCAGGACAAGCATTGGGAGGACACAAGAGGTGCCATTGGATCACATCAAATGCACCAGACACATCAACATTGGCAAGGTTTCAACAATTTCATCATCAAGAACACATTGAACAAATACCAAAGTTTGATGCATCCTCTGAGACAATTGATCTCAAACTAGACCTCAACCTCCCTGCTCCTACCAACAATGAACTTGCAAGAAGGAATAATAATGTGTCCACAGAAATTTACTTGCAGCCATGGGTTGCAACAAAGGAAATCAAAGAGGATAATAACAATAGTCAATGTCAGAGTCATCAGCATGTTAACCAAGTTGACAATGAAAATGATGAGGACAAAAACAATAACACTTTGATGCAAAATGTGGATAATGAAGCTGATAGTAAGATCAAGTTGGCAAAATTAAGTGAGCTAAAGGACATAAACATGGGTGGAACTTCTTCACCATGGTTGCAGGTGGGAATCGGTTCAACAACCGATGTGGGGACTGATACATAA 1458 0.4122 MALIVDQQSNFKHFCKICKKGFGCGRALGGHMRAHGIGDESGHMDDDDPASDWEERLGGNVPPSNKRMYALRTNPNRLKSCRVCENCGKEFLSWKSFLEHGKCTSEDAESLSLVSSPGSDAVADDVGRRGCGGWSKRKRSLRTKVGSFNYNCPSSEEEDLANCLMMLSNAIVDPLVAEPEESCASASKDIEERRNPMNFIAPLPYRAPIDHNNNNNNKAKGVASRGLFECKACKKVFNSHQALGGHRASHKKVKGCFAARLDNIDDSLVEDDVITHEEFFPTKSNSTFQFDHGSSNPTLGSSSKRKSKVHECSICHRSFSSGQALGGHKRCHWITSNAPDTSTLARFQQFHHQEHIEQIPKFDASSETIDLKLDLNLPAPTNNELARRNNNVSTEIYLQPWVATKEIKEDNNNSQCQSHQHVNQVDNENDEDKNNNTLMQNVDNEADSKIKLAKLSELKDINMGGTSSPWLQVGIGSTTDVGTDT. 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10778 485 ProSiteProfiles Zinc finger C2H2 type domain profile. 228 255 IPR013087 -
Seca3g10778 485 MobiDBLite consensus disorder prediction 285 303 - -
Seca3g10778 485 ProSitePatterns Zinc finger C2H2 type domain signature. 15 35 IPR013087 -
Seca3g10778 485 ProSitePatterns Zinc finger C2H2 type domain signature. 312 332 IPR013087 -
Seca3g10778 485 Pfam C2H2-type zinc finger 309 334 - -
Seca3g10778 485 Pfam C2H2-type zinc finger 13 35 - -
Seca3g10778 485 Pfam C2H2-type zinc finger 228 252 - -
Seca3g10778 485 Gene3D Classic Zinc Finger 226 332 - -
Seca3g10778 485 SUPERFAMILY beta-beta-alpha zinc fingers 13 101 IPR036236 -
Seca3g10778 485 MobiDBLite consensus disorder prediction 38 59 - -
Seca3g10778 485 PANTHER OS02G0659100 PROTEIN 2 482 - -
Seca3g10778 485 MobiDBLite consensus disorder prediction 38 54 - -
Seca3g10778 485 ProSitePatterns Zinc finger C2H2 type domain signature. 230 250 IPR013087 -
Seca3g10778 485 SMART c2h2final6 310 332 IPR013087 -
Seca3g10778 485 SMART c2h2final6 13 35 IPR013087 -
Seca3g10778 485 SMART c2h2final6 228 250 IPR013087 -
Seca3g10778 485 MobiDBLite consensus disorder prediction 285 304 - -
Seca3g10778 485 SUPERFAMILY beta-beta-alpha zinc fingers 227 332 IPR036236 -
Seca3g10778 485 ProSiteProfiles Zinc finger C2H2 type domain profile. 310 332 IPR013087 -
Seca3g10778 485 Gene3D Classic Zinc Finger 11 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10778 Seca-Chr3 254054511 254055968 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10778 124 377 C2H2 Transcription Factor Family AT1G02040 34.510 1.49e-30 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca3g10778 zf-C2H2_6 1.6e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10778 - - gmx:100793846 809.29