Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10777 ATGGATGTTGTTCTTCATTACATGTTTTCTCTTATATTACTTCTTTCTCTACTCTTAAACCCTTGTTATTGCCTCCTCCATCGAAAATTGTTTAATGTTTCCAAAATTGAAAACGAGGATCAATGGCAAACAGCAGCAGCTACATGGTATGGAGCTCCAGATGGTGGTGGAACAGATGGGGGTGCTTGTGGATACGTTGACAGTGTGGACAAACCTCCACTCTCTAAAATGGTATCAGCTGGTGGTCATTCTCTTTTCCTTGATGGCGAAGGATGTGGTGCCTGTTATGAGGTGAAATGCACAGAAAATGGTGCATGTTCAGGAAAAGCGGTGACAGTGATGATATCTGATGAATGTCCTGGCTGTGCCTTAAAATCAGTCCAATTCGATATGAGTGGCACTGCCTTTGGTTCCATGGCAAGTCCAGGCAAGGCAGATGAACTTCGCAAAGCTGGACAGCTTAATAATATTCAGTATAGAAGGGTTGCATGTTCGTTTGGGAATTCTATAGCGTTCAGAATTGACGGTGGGGCGAACCCATACTATTTTGCGACGGAAATAGAATACGAAAATGGGGATGGGGATCTTGTAGACATTGAGTTGAAGCAAGGTCATAAATCAGACACGTGGCTTCCAATGAAGCGTTCGTGGGGTGCAAGATGGGCTTTGCAATCATCAAGTGGTTCAGAGCTGCAACCTCCATTCTCAATAAAGCTCATAGAGGCTTGCAAGGGTACCAACAAGACCCTTGTGGCCGATAATGTCATTCCTCTCAACTGGCAACCTGATCAAGTTTATCGATCTGTCGTCAATTTCTAG 819 0.4408 MDVVLHYMFSLILLLSLLLNPCYCLLHRKLFNVSKIENEDQWQTAAATWYGAPDGGGTDGGACGYVDSVDKPPLSKMVSAGGHSLFLDGEGCGACYEVKCTENGACSGKAVTVMISDECPGCALKSVQFDMSGTAFGSMASPGKADELRKAGQLNNIQYRRVACSFGNSIAFRIDGGANPYYFATEIEYENGDGDLVDIELKQGHKSDTWLPMKRSWGARWALQSSSGSELQPPFSIKLIEACKGTNKTLVADNVIPLNWQPDQVYRSVVNF. 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10777 272 Gene3D - 30 165 IPR036908 -
Seca3g10777 272 Pfam Lytic transglycolase 79 150 IPR009009 -
Seca3g10777 272 SUPERFAMILY PHL pollen allergen 169 268 IPR036749 -
Seca3g10777 272 PRINTS Expansin/Lol pI family signature 82 100 IPR007118 GO:0005576
Seca3g10777 272 PRINTS Expansin/Lol pI family signature 59 77 IPR007118 GO:0005576
Seca3g10777 272 PRINTS Expansin/Lol pI family signature 152 168 IPR007118 GO:0005576
Seca3g10777 272 PRINTS Expansin/Lol pI family signature 210 224 IPR007118 GO:0005576
Seca3g10777 272 PRINTS Expansin/Lol pI family signature 41 56 IPR007118 GO:0005576
Seca3g10777 272 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 181 268 IPR007117 -
Seca3g10777 272 PRINTS Major pollen allergen Lol pI signature 140 155 IPR005795 GO:0005576|GO:0019953
Seca3g10777 272 PRINTS Major pollen allergen Lol pI signature 100 110 IPR005795 GO:0005576|GO:0019953
Seca3g10777 272 PRINTS Major pollen allergen Lol pI signature 172 187 IPR005795 GO:0005576|GO:0019953
Seca3g10777 272 PRINTS Major pollen allergen Lol pI signature 80 91 IPR005795 GO:0005576|GO:0019953
Seca3g10777 272 PRINTS Major pollen allergen Lol pI signature 188 203 IPR005795 GO:0005576|GO:0019953
Seca3g10777 272 PRINTS Major pollen allergen Lol pI signature 244 261 IPR005795 GO:0005576|GO:0019953
Seca3g10777 272 Gene3D - 166 272 IPR036749 -
Seca3g10777 272 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 60 169 IPR007112 -
Seca3g10777 272 SUPERFAMILY Barwin-like endoglucanases 40 166 IPR036908 -
Seca3g10777 272 PANTHER EXPANSIN-B3 17 272 - -
Seca3g10777 272 Pfam Expansin C-terminal domain 170 257 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10777 Seca-Chr3 254044474 254045899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10777 20 272 Expansin Gene Family AT1G65680 52.157 1.67e-87 260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10777 - - gmx:100786475 367.466