Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10775 ATGGAGAGATCTTCATTGTCCACTAAAAGGAACAGAGCTGCAGCTGTGCACAACCAATCTGAAAGGAAAAGGAGAGATAAGATCAACCAAAGAATGAAGGCATTGCAAAAGTTGGTCCCAAATTCCAGTAAGAGTGATAAAGCATCAATGCTGGATGAGGTAATAGAATATCTGAAGCAATTGCAAACGCAAGTACAAATGATGAATTGGATGAAAATGTCGACCATGATGCTGCCAATAACCATGCAACAACAACTTCAAATGTCTATGATGGCTCAAATGGGGATGGGAATGGGCATGGACATGAATATTCCAAACATCCCTCCTGTCTTCCCCTTCATGCCTATGGCCTCGTCATGGGATGCCTGCGGTGGGGATCGACTGCAAGGAGCACCACCAACGCCTGTAAGCATGGATGCATACAACAGGATGGCTGCAGCCCTGTATTCGCAGCTGCAGCATCCTCCAGGTTCTAATTCCAAGAGCTTAACGAGCGAGCTTCTACATGCTAGCTCCACCTTTCTGACTGGATAA 534 0.4588 MERSSLSTKRNRAAAVHNQSERKRRDKINQRMKALQKLVPNSSKSDKASMLDEVIEYLKQLQTQVQMMNWMKMSTMMLPITMQQQLQMSMMAQMGMGMGMDMNIPNIPPVFPFMPMASSWDACGGDRLQGAPPTPVSMDAYNRMAAALYSQLQHPPGSNSKSLTSELLHASSTFLTG. 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10775 177 FunFam transcription factor UNE10 isoform X1 7 72 - -
Seca3g10775 177 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 15 79 IPR036638 GO:0046983
Seca3g10775 177 MobiDBLite consensus disorder prediction 1 27 - -
Seca3g10775 177 CDD bHLH_AtPIF_like 12 73 IPR047265 -
Seca3g10775 177 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 3 158 IPR031066 -
Seca3g10775 177 Gene3D - 7 73 IPR036638 GO:0046983
Seca3g10775 177 Coils Coil 18 38 - -
Seca3g10775 177 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 12 61 IPR011598 GO:0046983
Seca3g10775 177 Pfam Helix-loop-helix DNA-binding domain 16 62 IPR011598 GO:0046983
Seca3g10775 177 SMART finulus 18 67 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10775 Seca-Chr3 253964839 253967583 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10775 3 73 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 84.507 2.42e-34 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca3g10775 HLH 1.7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10775 - - gmx:100787929 188.348