Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10767 ATGGGGTGTTTCACTATCTTCATGTCCAAGAAGAAAAAATCTGATCAAAATCAAATCATGCACTTAAGGCGTGCCAGCCTTGATGAGCATGTGCCTACAGCACTTCCTGAACCTCAAACTCTTACTCAGTCATCGCGGTCTAGTAGAGGGAAATCCATTCACCCCATTAATAATTTTTACAACAACAGAACACGAGCATTATCTGCTCCATCATCTCTTGCTGCTGCAGAACAGAATGCTCCAGCCTCATTTGAGAATGAGGAACAAGAAAGGCCAAAGTGCCGAACAAGATCACTGAAGGAGCAGCAATTACCTGTGCCACAACCTTTACCCCTTCCCACTCCTAAGAATGGTGGTGCATCAAAGGCTATTAACAGCCATAAGTCAGGGTTGGCTAGGGGTTCTAAAAATGCTTCTGGTTCAGCTCTTGATGCAGCAGAACAAGTTGATTTGGCCTCAAATAAATATGAAGAAGGAAAGAAAGAGTCTAAACAACAAGCTGGGGCAATGAAGGAGCAGCATTTACCTAATCCACAACCTTGCCCTCTTCCATATCCTCAGGGTGGTGCATTGAAGGCTACTGGCAACTTTAAGTTAGGGATGCCTAGTTTTCCTCTATATGCTTCTGGATCTTTTCCCCTTCCATCCACTGGGCCGCTTCGTTACTTTCTGTATGAAGAAATTGCTGCTGCTTGCCACAATTTCTCCTCAGATCAATGCATGGCAGAAGGTCTTTCTTCCACCATTTATAAAGCTTCCTTTGCTGATAATCATTCAACTTCAAAGGAGTTTGAAGCCACTATCACCCGCCTTAACCCATCAACTCAGGGTTTGAGGGATTTCCTTAATGAGGTGAATATTCTTGCATCTTTGCAACATCCCAACCTCTGCAAACTGCTAGGATTTCATGTGCGTGATGGATCTGAGCCAAGGATGTTGGTCTACGAAAGGCTATGCCATGGAAGCTTGGACCGCTTGTTATTTGGAAGATCTGATGCTCCTTCAATTGACTGGAACACCAGAATGAAAATTTCCTTTTGTGCTGCCCAAGGTCTGAATTTCTTGCATGAACAAGGGCCTTTCCAGACAATGTATAATGAATTTTCAACTGCCAACATACAAATTGACAACGATTTCAATGCAAAGCTCTCAGGATATGGTTGTGTTGGACATATTCCTGGGAAAGAGATTTCAAGCAGGCCACTCACTGCTAGAAAGCTTTCATTGGAAACACTGGAAAGAGAAATGCTTAATGAAAAGAACAATGTGTGGAGTTTTGGAATTGTTCTTCTGGAGCTACTTACTGGCAGAAAGAATCTGGACACCCATCACCCCAAAGAGGAGAGGGACTTAATCAAGTGGACCAAGCCTTTCCTTGCTGATGATTTCCGGCTGCCATTGATAATGGATCCTCAACTTAAGGGTCACTTTCCATCCAGAGCAGTGAGAGTAGTAGCTGACATTGTGCAAAGATGCCTCCAAAAGGAGCCATCAGACAGACCCAACATGAGAACCATTGTTGAGCATCTGAAAGTGATACAGAATATGAAGTACTGCTGTTGGTTCCCACTGCAAGAGCCAGCAGGCATGCCTAGGAAAGAAAAGGCAAAATCACCAAGTTTTGATGGCATCACTTCTCATGCACCTACTTCAAGTTTCCCTCCATCATCATCATCAGTAGCAAGACCATCTTCTTCACCTCCAAGATGGGCTGGTGTGCCCACCCCACTTCCTTCTCCTTGTGGTTGTTCCTCCACTCCCTCAATTGGGGAGCCTAGTAGATAG 1785 0.4437 MGCFTIFMSKKKKSDQNQIMHLRRASLDEHVPTALPEPQTLTQSSRSSRGKSIHPINNFYNNRTRALSAPSSLAAAEQNAPASFENEEQERPKCRTRSLKEQQLPVPQPLPLPTPKNGGASKAINSHKSGLARGSKNASGSALDAAEQVDLASNKYEEGKKESKQQAGAMKEQHLPNPQPCPLPYPQGGALKATGNFKLGMPSFPLYASGSFPLPSTGPLRYFLYEEIAAACHNFSSDQCMAEGLSSTIYKASFADNHSTSKEFEATITRLNPSTQGLRDFLNEVNILASLQHPNLCKLLGFHVRDGSEPRMLVYERLCHGSLDRLLFGRSDAPSIDWNTRMKISFCAAQGLNFLHEQGPFQTMYNEFSTANIQIDNDFNAKLSGYGCVGHIPGKEISSRPLTARKLSLETLEREMLNEKNNVWSFGIVLLELLTGRKNLDTHHPKEERDLIKWTKPFLADDFRLPLIMDPQLKGHFPSRAVRVVADIVQRCLQKEPSDRPNMRTIVEHLKVIQNMKYCCWFPLQEPAGMPRKEKAKSPSFDGITSHAPTSSFPPSSSSVARPSSSPPRWAGVPTPLPSPCGCSSTPSIGEPSR. 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10767 594 Pfam Protein tyrosine and serine/threonine kinase 239 510 IPR001245 GO:0004672|GO:0006468
Seca3g10767 594 SUPERFAMILY Protein kinase-like (PK-like) 212 523 IPR011009 -
Seca3g10767 594 MobiDBLite consensus disorder prediction 119 136 - -
Seca3g10767 594 MobiDBLite consensus disorder prediction 151 168 - -
Seca3g10767 594 PANTHER OS01G0588500 PROTEIN-RELATED 153 514 - -
Seca3g10767 594 Gene3D Transferase(Phosphotransferase) domain 1 318 520 - -
Seca3g10767 594 MobiDBLite consensus disorder prediction 35 57 - -
Seca3g10767 594 MobiDBLite consensus disorder prediction 531 594 - -
Seca3g10767 594 MobiDBLite consensus disorder prediction 543 565 - -
Seca3g10767 594 Gene3D Phosphorylase Kinase; domain 1 215 316 - -
Seca3g10767 594 ProSiteProfiles Protein kinase domain profile. 235 512 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g10767 594 MobiDBLite consensus disorder prediction 70 181 - -
Seca3g10767 594 MobiDBLite consensus disorder prediction 36 57 - -
Seca3g10767 594 MobiDBLite consensus disorder prediction 84 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10767 Seca-Chr3 253883748 253886152 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10767 210 516 Receptor kinase-like Gene Family AT4G02010 35.463 5.23e-53 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-II Seca3g10767 PK_Tyr_Ser-Thr 1.7e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10767 - - aprc:113849641 710.679