Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10760 ATGGAATGTGAAGAGAACAACTCTGTGGGATTGGAATCAAAATCAGTGAGGCATAACAATGGGTCAATTCCAAATCAACAAATAACAATTGATGAGAACCTTCTGGTTGACCCCAATTTGTTGTTTATTGGAGCAAAAATTGGCGATGGTGCTCATGGGAGAGTTTATAGAGGAAGGTATAGAGATGGAATTGTTGCTATTAAAGTTCTACATGATGGGAGCACTTCAGAAGAAAGAGCTATCCTTGAAAGTCGTTTTGCTCGGGAAGTTAATATGATGTCTCGTGTCCAACATGAGAATCTTGTTAAGGTGTGTCATTGTTTTGTATATGCCTGTAATTGTCTTATCTGTATCTGTTTAGTCACTGTTTCAGTGAAGCAGTTTATTGGAGCTTGTAAGGATCCTCTGAAGGTGATTGTTACAGAGCTGTTACCAGGGATGTCATTGAGAAAATATTTGATCACTCTACGCCCTAAAACATTGGACCTTTTAGTGGCTATAAACTTTGCCCTTGATATTGCTCGAGCTATGGATTGGCTACATGCCAATGGGATCATACATAGAGATCTGAAACCTGACAATTTGCTACTTACAGCAAATCAGAAGTCAGTTAAACTTGCTGATTTTGGTATGGCAAGAGAAGAATCTCTGACTGAAATGATGACTGCGGAAACTGGAACTTACCGTTGGATGGCACCAGAGTTATACAGTACTGTAACATTGCGTCAAGGGGAGAAAACGCATTACAACAACAAGGTTGATGTCTACAGCTTTGGAATTGTTTTATGGGAGCTACTAACAAATCGCATGCCATTTGAAGGAATGTCCAATTTACAGGCTGCTTATGCTGTTGCATTTAAGCAAGAGAGGCCTAACCTTCCAGGCGATATATCTCCTGATCTTGCCTTCATCATACAATCATGCTGGGTTGAAGATCCTAACCTGAGACCAAGCTTTAGTCAAATTATCCGCATGCTTAATGAATTTCTCTTAACACTCCAACAACCACCCCCTTCTTTGCCAGAACCTCACAAGGAACCTCAGGAGGAGGAGGCTACTTCTACCTGTGACAGAAGCAAGTTTGCTTTTCTTCGCCATTTGTTTTCTTCAAAGAGAACCAAAAACTAA 1128 0.4043 MECEENNSVGLESKSVRHNNGSIPNQQITIDENLLVDPNLLFIGAKIGDGAHGRVYRGRYRDGIVAIKVLHDGSTSEERAILESRFAREVNMMSRVQHENLVKVCHCFVYACNCLICICLVTVSVKQFIGACKDPLKVIVTELLPGMSLRKYLITLRPKTLDLLVAINFALDIARAMDWLHANGIIHRDLKPDNLLLTANQKSVKLADFGMAREESLTEMMTAETGTYRWMAPELYSTVTLRQGEKTHYNNKVDVYSFGIVLWELLTNRMPFEGMSNLQAAYAVAFKQERPNLPGDISPDLAFIIQSCWVEDPNLRPSFSQIIRMLNEFLLTLQQPPPSLPEPHKEPQEEEATSTCDRSKFAFLRHLFSSKRTKN. 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10760 375 CDD STKc_MAP3K-like 47 326 - -
Seca3g10760 375 Gene3D Transferase(Phosphotransferase) domain 1 148 361 - -
Seca3g10760 375 Pfam Protein kinase domain 45 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g10760 375 PRINTS Tyrosine kinase catalytic domain signature 141 154 IPR001245 GO:0004672|GO:0006468
Seca3g10760 375 PRINTS Tyrosine kinase catalytic domain signature 179 197 IPR001245 GO:0004672|GO:0006468
Seca3g10760 375 PRINTS Tyrosine kinase catalytic domain signature 253 275 IPR001245 GO:0004672|GO:0006468
Seca3g10760 375 PRINTS Tyrosine kinase catalytic domain signature 297 319 IPR001245 GO:0004672|GO:0006468
Seca3g10760 375 ProSitePatterns Protein kinases ATP-binding region signature. 47 68 IPR017441 GO:0005524
Seca3g10760 375 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 41 330 - -
Seca3g10760 375 ProSiteProfiles Protein kinase domain profile. 41 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g10760 375 ProSitePatterns Serine/Threonine protein kinases active-site signature. 185 197 IPR008271 GO:0004672|GO:0006468
Seca3g10760 375 MobiDBLite consensus disorder prediction 336 358 - -
Seca3g10760 375 SMART serkin_6 41 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g10760 375 SUPERFAMILY Protein kinase-like (PK-like) 25 350 IPR011009 -
Seca3g10760 375 PIRSF TyrPK_CSF1-R 38 113 - -
Seca3g10760 375 PIRSF TyrPK_CSF1-R 148 372 - -
Seca3g10760 375 Gene3D Phosphorylase Kinase; domain 1 25 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10760 Seca-Chr3 253744399 253748381 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10760 29 375 MAP Kinase Kinase Kinase AT5G01850 70.112 3.75e-174 487
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Seca3g10760 Pkinase 4e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10760 - - gmx:100816708 545.043