Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10754 ATGGGGAATTACAGGTTTAAGTTATCAGATATGATTCCAAATGCTTGGTTTTACAAGCTGAGGGATATGGGGAGAGGAAAAAAGCAAACAAACACTTCCTCCAGAAACAAAAAACAATCTTTATCAACCTCAACCACACAGTCATCAAAACCAAAACAACCCCACCAATGCAATCCCAGAAAATCATACTACTTCACAAGAGAGCTTAACCAAACCAGCAACAGATTCTACACCTCACCAGCAAACAACCCAAAAATCCTACAAACCAACAATTCCCCTGAACCACCCAGAAGACCATCCAAACAGAGAACCACCAGAAGAAGAAGAAGCACAAGAAGAGTTTCTTCCCCAAAGCTTGTCACTTCCTCTGGTTGTAGCTGCCGCACCACCCTTGAATCCGTGTGGACCAAATCTGATTCCCCACAAGAACACTCTTCATCTCCATTTGATAGCTCTGCTGAGTCAGAATTCCCTGACCCAGAATTCAGAACAGACCGTGTTCTTCCCACTGAGTCATTCGATGAAATGGTTTCTTGTGCTTGCAAGCTAAGTTCCAACCCCATCACCACAGATATTGTTATCGATGTGGACAAGAATTCTCTAGCCAGAAAAGATGATAAGCTTGAAAGGTATGAATATGATACTTTTACAGAGCTGGAACTTCCTCCTATCATAACAAAACCACCCAATTTCAATGACTCTCTGAGTGATACCAAGAAGAAAGAACCCAAACCCAGAAGAAGAATGGCCACACATGAAGAAAAAACCAACGAGGAAGCGTCTCTGAAGGTGAAAATTGTGAAGGAAGACACAACAGCATCAATGAAAGAACAGAGGAATGTCACTGTTAAGAAATTCTCTTCTTCTTCTTATTCTCACTCTGTGAATTCTCCAGGAGTGAAGCTTCGCGTCCACTCGCCGAGAATTGCTAGCCTGAAGGTTCAGTCTCATGGCCGGAAAAGCGTGTCGTCGACGGCGAGCTCTGGCTCCCGGAGAAGCCTCTCTGATAGCTTTGCAATAGTGAAGTCATCGTTCAACCCACAAAAGGATTTCAGAGAGTCAATGGTGGAGATGATTGTGCAGAACAACATAAGGGCCTCAAAGGATTTGGAAGATCTTCTTGCTTGTTACCTTTCTCTCAATTCAGATGAGTATCATGACCTCATCATCAAGGTGTTCAAGCAAATTTGGTTTGATTTGACTGAAAAATAA 1212 0.4282 MGNYRFKLSDMIPNAWFYKLRDMGRGKKQTNTSSRNKKQSLSTSTTQSSKPKQPHQCNPRKSYYFTRELNQTSNRFYTSPANNPKILQTNNSPEPPRRPSKQRTTRRRRSTRRVSSPKLVTSSGCSCRTTLESVWTKSDSPQEHSSSPFDSSAESEFPDPEFRTDRVLPTESFDEMVSCACKLSSNPITTDIVIDVDKNSLARKDDKLERYEYDTFTELELPPIITKPPNFNDSLSDTKKKEPKPRRRMATHEEKTNEEASLKVKIVKEDTTASMKEQRNVTVKKFSSSSYSHSVNSPGVKLRVHSPRIASLKVQSHGRKSVSSTASSGSRRSLSDSFAIVKSSFNPQKDFRESMVEMIVQNNIRASKDLEDLLACYLSLNSDEYHDLIIKVFKQIWFDLTEK. 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10754 403 ProSiteProfiles OVATE domain profile. 340 399 IPR006458 -
Seca3g10754 403 MobiDBLite consensus disorder prediction 136 161 - -
Seca3g10754 403 MobiDBLite consensus disorder prediction 224 259 - -
Seca3g10754 403 MobiDBLite consensus disorder prediction 75 124 - -
Seca3g10754 403 Pfam DNA-binding domain 1 40 IPR025830 GO:0003677
Seca3g10754 403 Pfam Transcriptional repressor, ovate 344 400 IPR006458 -
Seca3g10754 403 MobiDBLite consensus disorder prediction 29 59 - -
Seca3g10754 403 MobiDBLite consensus disorder prediction 234 259 - -
Seca3g10754 403 MobiDBLite consensus disorder prediction 25 59 - -
Seca3g10754 403 NCBIfam uncharacterized plant-specific domain TIGR01568 339 401 IPR006458 -
Seca3g10754 403 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 211 401 IPR038933 GO:0045892
Seca3g10754 403 MobiDBLite consensus disorder prediction 75 98 - -
Seca3g10754 403 MobiDBLite consensus disorder prediction 136 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10754 Seca-Chr3 253605949 253607160 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Seca3g10754 Ovate 7e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10754 - - aprc:113850281 461.07