Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10748 ATGCAAAAAGTGTTACTAGAAATGGAGCAGAAAGGAAGTGTGCTTATGCAACGATATGAGCTAGGTAAATTATTAGGCCAAGGAACCTTTGCAAAGGTCTACCATGCAAGAAACCTCAAAACTGGCATGAGTGTGGCCATTAAAATTGTTGATAAAGAGAAGATTTTGAAGGTTGGCATGATTGATCAGATTAAGCGCGAAATTTCAGTGATGAGACTAATCAGGCATCCACATGTGGTTGAGCTTTATGAGGTAATGGCCAGCAAAACCAAGATTTACTTTGTCATGGAGTATGTAAGAGGTGGTGAGCTTTTCAACAAGGTATCCAAAGGAAAGCTCAAGCAGGATGATGCTAGAAGATATTTTCAGCAATTGATCAGTGCTGTTGACTACTGTCATAGCAGAGGCGTGTGTCATCGTGATCTAAAACCAGAAAATCTTCTATTGGATGACAATGGAAATTTGAAGGTCTCAGATTTTGGATTAAGTGCCCTTGCTGAGTCTAAGCACCAAGATGGATTACTCCATACTACATGTGGTACCCCTGCCTATGTTGCTCCAGAAGTGATAAACAGAAGGGGATATGATGGGGCCAAAGCTGATATATGGTCATGTGGGGTGATCTTATATGTTCTATTGGCTGGTTATCTTCCATTTAGAGATCCAAATCTGATGGAGATGTACAGGAAGATTGGTAAGGCAGAATTCAAATTTCCTAACTGGTTTGCACCAGATGTACGTAGATTGTTGTCCAAAATCTTGGATCCAAACCCAAAGACTAGGATATCAATGGCCAAAATTATGGAAAGTTCTTGGTTCAAAAAGGGGTTAGAGAAGGCCACTGTTACTGACAGCGAATACAAAGAAATAGCTCCTCTGGATGCTGATGGAGTATTTGGAGCTTGTGAGAATGGAGGTCCTGATGAACTGTCAAAAGACTCAAAACCTTGTAATTTAAATGCTTTTGATATCATCTCCTTTTCATCAGGTTTTGACTTGTCCGGCTTATTCGAGGAGACTGATCAAAAGAAAGAAGTGCGGTTTACATCTAACAAGCCTGCCTCAATTATCATCTCCAAGTTCCAAGAAATTTGTAAGCGTCTTGGGTTGAAAGTGAAGAAGAAAGATGGAGGTTTGTTCAAGTTGGAAGGTTGCAAAGAAGGCAGAAAAGGGCCTTTGGGTATTGATGCAGAGATTTTTGAGATCACCCCAGTCTTCCATCTGGTGGAGTTAAAGAAGTCCAGTGGAGATACATTGGAGTACCAAAAGCTTTTGAAACAGGATGTTAGACCTGCACTTAAGGACATTGTTTGGGCCTGGCAAGGAGAACAACCACAGATTTTGCAACATGAAGTAGTGCAGAAAGAGGATCAGCCTTCACATTCTGACATATCAGAGGTTGTATCATAA 1410 0.4078 MQKVLLEMEQKGSVLMQRYELGKLLGQGTFAKVYHARNLKTGMSVAIKIVDKEKILKVGMIDQIKREISVMRLIRHPHVVELYEVMASKTKIYFVMEYVRGGELFNKVSKGKLKQDDARRYFQQLISAVDYCHSRGVCHRDLKPENLLLDDNGNLKVSDFGLSALAESKHQDGLLHTTCGTPAYVAPEVINRRGYDGAKADIWSCGVILYVLLAGYLPFRDPNLMEMYRKIGKAEFKFPNWFAPDVRRLLSKILDPNPKTRISMAKIMESSWFKKGLEKATVTDSEYKEIAPLDADGVFGACENGGPDELSKDSKPCNLNAFDIISFSSGFDLSGLFEETDQKKEVRFTSNKPASIIISKFQEICKRLGLKVKKKDGGLFKLEGCKEGRKGPLGIDAEIFEITPVFHLVELKKSSGDTLEYQKLLKQDVRPALKDIVWAWQGEQPQILQHEVVQKEDQPSHSDISEVVS. 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10748 469 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 10 434 - -
Seca3g10748 469 ProSiteProfiles NAF domain profile. 314 338 IPR018451 GO:0007165
Seca3g10748 469 SMART serkin_6 19 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g10748 469 Pfam NAF domain 316 374 IPR004041 GO:0007165
Seca3g10748 469 Gene3D Kinase associated domain 1, KA1 313 439 - -
Seca3g10748 469 ProSitePatterns Serine/Threonine protein kinases active-site signature. 137 149 IPR008271 GO:0004672|GO:0006468
Seca3g10748 469 ProSiteProfiles Protein kinase domain profile. 19 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g10748 469 FunFam Non-specific serine/threonine protein kinase 314 438 - -
Seca3g10748 469 FunFam Non-specific serine/threonine protein kinase 9 294 - -
Seca3g10748 469 CDD CIPK_C 320 434 - -
Seca3g10748 469 Gene3D Transferase(Phosphotransferase) domain 1 9 304 - -
Seca3g10748 469 FunFam Non-specific serine/threonine protein kinase 10 98 - -
Seca3g10748 469 Pfam Protein kinase domain 19 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g10748 469 SUPERFAMILY Protein kinase-like (PK-like) 15 284 IPR011009 -
Seca3g10748 469 CDD STKc_SnRK3 18 272 - -
Seca3g10748 469 ProSitePatterns Protein kinases ATP-binding region signature. 25 48 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10748 Seca-Chr3 253535211 253538256 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10748 8 447 CBL-interacting serine-threonine protein kinases AT5G58380 67.325 0.0 632
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Seca3g10748 Pkinase 7.3e-77 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10748 K07198 - gmx:100815651 828.55