Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10739 ATGACCCATATTGCTCCCTTGTCTATCACCGGAAACTTCAACATTGTATCTTTCACAGGAACTTACATGGGTGGTCATTTTCCTCCACTCTCCTCTCACACCCCTGCTTGTTCTTCTTTTGTGATTAACCTCTCAAGCTTCCCAAGTCAGGTGTTCTGTGGACTTGTTGAAGGAAGGGTTATAGCTGCGAGTCATGTGGTTGTTGTGGCATCAACATTCAAGAAGTTTGAGTACCACATTGTTCCAGAAATTGCTGAGGAAGTTGAAGAGGGTGACCTCACAAATATTGCGGCCATTAATGCTGATGCAAGTGATGCTAATGGCACCATCGACAACACCGGCATTGCCATGACTAATAATGTGTCTTCTTTCGGTGGTGCAAGCAGCGAATACAAGATCTCCCTCTCCAACAACGACAATTATGAGGAAGTGTCAAAATCAGTCATCTTTGAAATCCCTGCTGGAAATGACATTGTTCAACCCATCATCGAGTATGCTTGTTGTCGTCGTGTTGGAATCGTAGTGCTATCTGGTTCAGGTTCTGATTCCGATGTTACCCTTCTCCACCCCATGACCCATATTGCTCCTTTGTCTATCACTGTAAACTTCAACATTGTATCTTTCATAGTAACTTACATGGGTGGTCATTTTCCTCCACTCTCCTCTCCCACCCCTACTTGTTCTTCTTTTGTGATTAACCTCTCAAGCTTCCCAAGTCAGGAAGTTGAAGAGGGTGACCCCACAAATGTTGCGGCCATTAATGCTGATGCAAGTGATGCTAATGGCATCACCAACAACACCGACATTGCCATGACTAAAATGTGTCTTCTTTCGCCCATCATCGAGTATGCTTGTCGTTGTCGTGTTGGCATCGTAGTGCTATCTGGTTTAGGTTCTGTTTCCGATGTTACCCATGACCCATATTGCTCCTTTGTCTATCATTGTAAACTTCAACATTGTATCTTTCACAGTAACTTACATGGGTGGTCATTTTCCTCCACTATCCTCTCCCACCCTGCTTGTTCTTCTTTTGTGATTAACCTCTCAAGCTTCCCAAGTCAGGTTTTCTGTGGACTGGTTGAAGAAAGGGTTATAGCTGCGAGTCGTGTGGTTGTTGTGGCATCAACATTCAAGTAG 1137 0.4424 MTHIAPLSITGNFNIVSFTGTYMGGHFPPLSSHTPACSSFVINLSSFPSQVFCGLVEGRVIAASHVVVVASTFKKFEYHIVPEIAEEVEEGDLTNIAAINADASDANGTIDNTGIAMTNNVSSFGGASSEYKISLSNNDNYEEVSKSVIFEIPAGNDIVQPIIEYACCRRVGIVVLSGSGSDSDVTLLHPMTHIAPLSITVNFNIVSFIVTYMGGHFPPLSSPTPTCSSFVINLSSFPSQEVEEGDPTNVAAINADASDANGITNNTDIAMTKMCLLSPIIEYACRCRVGIVVLSGLGSVSDVTHDPYCSFVYHCKLQHCIFHSNLHGWSFSSTILSHPACSSFVINLSSFPSQVFCGLVEERVIAASRVVVVASTFK. 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10739 378 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 144 221 IPR014476 GO:0003680
Seca3g10739 378 Pfam Plants and Prokaryotes Conserved (PCC) domain 280 377 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10739 Seca-Chr3 253461300 253464641 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10739 149 230 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 39.535 2.22e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10739 - - aew:130771067 68.5514