Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10738 ATGGCTGAAGATGGGCGTATACTCTCTCCGTCCATTGCCTTGGTGAATAACTCCTCAAAGCTCAACTCAAAGAGTTTTGACACTTTCTACAACAACTCCTCTGTCATAGGTGGTGCAAGCAGCGAATACAAGATCTCCCTCTCTAACAACGATAATTATGAGGAAGTGTCAAAATCAGTCATCTTTGAAATCCCTACTGGAAATGACATTGTTCAGCCCATCATCGAGTATGCTTGTCATCGTCGTGTTGGCATCGTAGTGCTATCTGGTTCAGGTTTTATTTCCGATGTTACCCTTCTCCACCCCATGACCCATATTGCTCCCTTGTCTATCACCGGACACTTCCACATCATATTTTTCACAGGAACTTACATGGGTGGTCATTTTCCTCCACTCTCCTCTCCCACCCCTGCTTGTTCTTTTTTTGTGATTAACCTCTCAAGCTTCCCAAGTCAGGTGTTCTGTGGACTTGTTGGAGGAAGGGTTATAGCTGCGAGTCGTGTTGTTGTTGTGGCATCAACATTCAAGAAGTTTGAGTACCACATTGTTCCTGGAATTACTGAGGAAGTTGAAGAGGGTGACCTCATAAATGTTGCGGTCATTAATACTGATGCAAGTGATGCTAATGGCATCACCAACAACATCGGAATTGCCATGACTAATAATGTGTCTTCTTTCGTTATTACCAATTTAACCTCACTGTATCACCAACTCCCTTTTCCATAA 726 0.4325 MAEDGRILSPSIALVNNSSKLNSKSFDTFYNNSSVIGGASSEYKISLSNNDNYEEVSKSVIFEIPTGNDIVQPIIEYACHRRVGIVVLSGSGFISDVTLLHPMTHIAPLSITGHFHIIFFTGTYMGGHFPPLSSPTPACSFFVINLSSFPSQVFCGLVGGRVIAASRVVVVASTFKKFEYHIVPGITEEVEEGDLINVAVINTDASDANGITNNIGIAMTNNVSSFVITNLTSLYHQLPFP. 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10738 241 Gene3D - 57 190 - -
Seca3g10738 241 ProSiteProfiles PPC domain profile profile. 54 196 IPR005175 -
Seca3g10738 241 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 56 193 IPR014476 GO:0003680
Seca3g10738 241 SUPERFAMILY AF0104/ALDC/Ptd012-like 58 181 - -
Seca3g10738 241 CDD DUF296 61 173 IPR005175 -
Seca3g10738 241 Pfam Plants and Prokaryotes Conserved (PCC) domain 59 176 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10738 Seca-Chr3 253396832 253397557 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10738 61 189 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 34.848 1.42e-17 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10738 - - cave:132164508 112.079