Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10735 ATGGCTGAAGATGGGCGTATACTCTCTCCGTCCATTCCCTTGGTGAATGACTCCTCACAACTCAACTCAGAGAGTTTTGACACTTTCTACAACAACTCCTCTGTCATAGGTGGTGCAAGCAGCGAATACAATATCTCCCTCTCCAACAACGACAATTATGAGGAAGTGTCAAAATCAGTCATCTTTGAAATTGCTGCTGGAAATGACATTGTTCAGCCCATCATCGAGTATGCTTGTCGTCGTCGTGTTGGCATCGTAGTGCTATCTGGTTCAGGTTCTGTTTCTGATGTTACCCTTCTCCATCCCAAGACCCATATTGCTCCTTTGGTTATAGCGGCGAGTCGTGTGGTTGTTGTGGCATCAACATTCAAGAAGTTTGAGTACCACATTGTTCCTGGAATTGCTGAGGAAGTTGAAGAGGGTGACCTCAAAAATGTTGCGGCCATTAATGCTGATGCAATGGCTGAAGATGGGCGTAAGCTCTCTCCATCCATTCCCTTGGTGAATGACTCCTCACAACTCAACTCAGAGAGTTTTGACCCTTTCTACAACAACTCCACTGTTATAGGTGGTGCAAGAAGCGAATACAAGATCTCCGTCTCCAACAACGACAATTATGAGGAAGTGTCAAAATCAGTCATCTTTGAAATCCCTGCTGGAAATGACATTGTTCAGCCCATCATCGAGTATGCTTGTCGTTGTCGTGTTGGCATCGTAGTGCTATCTGGTTCTGGTTTTGTTTCCGATGTTACCCTTCTCCACCCCATTACCTATTTCGCTCCTTTGTCTATCAGCGGACACTTCAACATTGTATCTTTCACAGGCACTTACATGGGTGGTCATTTTCCTCTACTCTCATCTCCCACCCCTGCTTGTTCTTCTTTTGTGATTAACCTCTCAAGCTTCCCGAGTCAGGTGTTTTGTGGACTTGTTGGAGGAAGGCTTATAGCTTCGAGTCGTGTTGTTGTTGTGGCATCAACATTCAAGAAGTTTGAGTACCACATTGTTCCTGGAATTACTGAGGAAGATGAAGAGGGTGACCTCACAAATATTGCAGCCATTAATGCTGATGCAAGTGATGCTAATGGCATCACCGACAACACCGACATTGCCATGACTAATAATGTGTCTTCTTCCGATGGGCGTATACTCTCTCCGTCCATTGCCTTGGTGAATAACTCCTCAAAGCTCAGCTCAGAGAGTTTTGACACTTTCTACAACAACTCCTCTGTCATAGGTGGTGCAAGCAGCGAATACAAGATCTCCCTCTCCAACAACGACAATTATGAGGAAGTGTCAAAATCAGTCATCTTTGAAATCCCTGCTGGAAATGACATTGTTCAGCCCATCATCGAGTATGCTTGTCTTCGTCGTGTTGGCATCGTAGTGCTATCTGGTTCAAGTTTTGTTTCCGATGTTACCCTTCTCCACCCCATGACCCATATTGCTACCTTGTCTATCACCGGACGCTTCAACATTATATCTTTCACAGGAACTTACATGGGTGGTCATTTTCCTCCACTCCCATCTCCCACCCCTGCTTGTTCTTCTTTTGTGATTAACCTCTCAAGCTTCCCGAGTCAAGTGTTTTGTGGACTTGTTGGAGGACGGCTTATAGCTGCGAGTCGTGTTGTTGTTGTGGCATCAACATTCAAGAAGTTTGAGTACCACATTGTTCCTGGAATTACTGAGGAAGATGAAGAGGGTGACCTCACAAATATTGGGGCCATTAATGCTGATGCAAGTAATGCTAATGGCATCACCGACAACACCGACATTGCCATGACTAATAATGTGTCTTTTTCCGATGGGCGTATACTCTCTCCGTCCATTGCCTTGGTGAATAACTCCTCAAAGCTCAGCTCAGAGAGTTTTGACACTTTCTACAACAACTCCTCTGTCATAGGTGGTGCAAGCAGCGAATACAAGATCTCCCTCTCCAACAACGACAATTATGAGGAAGTGTCAAAATCAGTCATCTTTGAAATCGCTGTTGGAAATGACATTGTTCAGCCCATCATCGAGTATGCTTGTCGTCGTCGTGTTGGCATCGTAGTGCTATCTGGTTCAGGTTTTGTTTCCGATGTTACCCTTCTCCACCCCATGACCCATATTGCTCCCTTGTCTATCACCGGACTCTTCAACATTATATCTTTCACAGGAACTTACATGGGTGGTCATTTTCCTCCACTCCCATCTCCCACCCCTGCTTGTTCTTCTTTTGTGATTAACCTCTCAAGCTTCCCGAGTCAGGTGTTTTGTGGACTTGTTGGAGGAAGGCTTATAGCTGCGAGTCGTGTTGTTGTTGTGGCATCAACATTCAAGAAGTTTGAGTACCAAATTGTTCCTGGAATTAGTGAGGAAGATGAAGAGAGTGACCTCACAAATATTGGGGCCGTTAATGCTTTGCAAGTGATGCTAATGGCATCACCGACAACACCGACATTGCCATGA 2454 0.4511 MAEDGRILSPSIPLVNDSSQLNSESFDTFYNNSSVIGGASSEYNISLSNNDNYEEVSKSVIFEIAAGNDIVQPIIEYACRRRVGIVVLSGSGSVSDVTLLHPKTHIAPLVIAASRVVVVASTFKKFEYHIVPGIAEEVEEGDLKNVAAINADAMAEDGRKLSPSIPLVNDSSQLNSESFDPFYNNSTVIGGARSEYKISVSNNDNYEEVSKSVIFEIPAGNDIVQPIIEYACRCRVGIVVLSGSGFVSDVTLLHPITYFAPLSISGHFNIVSFTGTYMGGHFPLLSSPTPACSSFVINLSSFPSQVFCGLVGGRLIASSRVVVVASTFKKFEYHIVPGITEEDEEGDLTNIAAINADASDANGITDNTDIAMTNNVSSSDGRILSPSIALVNNSSKLSSESFDTFYNNSSVIGGASSEYKISLSNNDNYEEVSKSVIFEIPAGNDIVQPIIEYACLRRVGIVVLSGSSFVSDVTLLHPMTHIATLSITGRFNIISFTGTYMGGHFPPLPSPTPACSSFVINLSSFPSQVFCGLVGGRLIAASRVVVVASTFKKFEYHIVPGITEEDEEGDLTNIGAINADASNANGITDNTDIAMTNNVSFSDGRILSPSIALVNNSSKLSSESFDTFYNNSSVIGGASSEYKISLSNNDNYEEVSKSVIFEIAVGNDIVQPIIEYACRRRVGIVVLSGSGFVSDVTLLHPMTHIAPLSITGLFNIISFTGTYMGGHFPPLPSPTPACSSFVINLSSFPSQVFCGLVGGRLIAASRVVVVASTFKKFEYQIVPGISEEDEESDLTNIGAVNALQVMLMASPTTPTLP. 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10735 817 ProSiteProfiles PPC domain profile profile. 207 354 IPR005175 -
Seca3g10735 817 SUPERFAMILY AF0104/ALDC/Ptd012-like 657 780 - -
Seca3g10735 817 ProSiteProfiles PPC domain profile profile. 653 798 IPR005175 -
Seca3g10735 817 CDD DUF296 660 772 IPR005175 -
Seca3g10735 817 ProSiteProfiles PPC domain profile profile. 430 572 IPR005175 -
Seca3g10735 817 SUPERFAMILY AF0104/ALDC/Ptd012-like 434 557 - -
Seca3g10735 817 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 57 104 IPR014476 GO:0003680
Seca3g10735 817 CDD DUF296 214 326 IPR005175 -
Seca3g10735 817 SUPERFAMILY AF0104/ALDC/Ptd012-like 211 334 - -
Seca3g10735 817 CDD DUF296 437 549 IPR005175 -
Seca3g10735 817 Gene3D - 210 343 - -
Seca3g10735 817 Gene3D - 657 795 - -
Seca3g10735 817 Gene3D - 433 565 - -
Seca3g10735 817 Pfam Plants and Prokaryotes Conserved (PCC) domain 435 552 IPR005175 -
Seca3g10735 817 Pfam Plants and Prokaryotes Conserved (PCC) domain 212 329 IPR005175 -
Seca3g10735 817 Pfam Plants and Prokaryotes Conserved (PCC) domain 658 775 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10735 Seca-Chr3 253388925 253393536 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10735 660 791 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 35.507 1.10e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10735 - - csv:101217818 122.094