Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10726 ATGGCTTCTGAGCAACGTAAAAAAGCAGCTATGCAGCGCAAGTTGCAACAACTTCGATCCGTCACAAATTCCAGTGCTGTGAACAAAGCCTCAATTATTGTGGATGCCACCAGATACATAGAGGAGTTGAAGCAAAAAGTGGAGGGATTGAACTCTGAGCTTGAAACCGCTGAATCCTCATCTACCTCCCAAGATAAACTACCTATGGTGATTATTGTCACCGTAGAAACCCTAGAAAAGGGTTTCCTTATTAATGTGTTTTCAGAAAGGAATTGCCCTGGTATGCTTGTGGCAATACTTGACGCCTTTGAAGAACTGGGACTTGATGTGCTTGATGTTAGGGTTTCTTGTGAAGACACTTTCCAGCTAGAAGCTGTGGGAGGAGAAAGTCAAGAGAATGAGAGCATCGACGCGCAAGTGGTGAAGCAAGCAGTGCTTCAAGCAATCAACAACATGGATTAA 462 0.4394 MASEQRKKAAMQRKLQQLRSVTNSSAVNKASIIVDATRYIEELKQKVEGLNSELETAESSSTSQDKLPMVIIVTVETLEKGFLINVFSERNCPGMLVAILDAFEELGLDVLDVRVSCEDTFQLEAVGGESQENESIDAQVVKQAVLQAINNMD. 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10726 153 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 149 - -
Seca3g10726 153 Coils Coil 33 60 - -
Seca3g10726 153 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 2 58 IPR036638 GO:0046983
Seca3g10726 153 Coils Coil 1 21 - -
Seca3g10726 153 Gene3D - 1 68 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10726 Seca-Chr3 253263585 253267433 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10726 1 129 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 29.375 6.61e-10 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10726 - - ccaj:109816195 247.284