Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10723 ATGGCTTCTGAGCAACGTAAAAAAGCAGCTATGCAGCGCAAGTTGCAACAACTTCGATCCGTCACAAATTCCAGTGCTGTGAACAAAGCCTCAATTATTGTGGATGCCACCAGATACATAGAGGAGTTGAAGCAAAAAGTGGAGGGATTGGACTCTCAGCTTGGAACCGCTGAATCTTCATCAACCTCTCAAGATAAACTGCCTATGGTGATTATGGTCACCGTAGAAACCCTAGAAAAGGGTTTCCTTATTAATGTGTTTTCAGAAAGGAATTGCCCTGGTATGCTTGTGGCAATACTTGACGCCTTTGAAGAACTGGGACTTGATGTGCTTGATGCTAGGGTTTCTTGTGAAGACACTTTCCATCTAGAAGCTGTGGGAGGAGAAAGTCAAGAGAATGAGAGCATCGACGCGCAAGTGGTGAAGCAAGCAGTGCTGCAAGCAATCAACAACATGGATTAA 462 0.4459 MASEQRKKAAMQRKLQQLRSVTNSSAVNKASIIVDATRYIEELKQKVEGLDSQLGTAESSSTSQDKLPMVIMVTVETLEKGFLINVFSERNCPGMLVAILDAFEELGLDVLDARVSCEDTFHLEAVGGESQENESIDAQVVKQAVLQAINNMD. 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10723 153 Gene3D - 1 68 IPR036638 GO:0046983
Seca3g10723 153 Coils Coil 1 21 - -
Seca3g10723 153 ProSiteProfiles ACT domain profile. 84 153 IPR002912 -
Seca3g10723 153 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 2 57 IPR036638 GO:0046983
Seca3g10723 153 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 149 - -
Seca3g10723 153 CDD ACT_UUR-ACR-like 93 149 - -
Seca3g10723 153 Coils Coil 33 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10723 Seca-Chr3 253223784 253225809 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10723 1 129 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 28.750 1.64e-10 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10723 - - ccaj:109816195 255.373