Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10718 ATGACTAGAATTTTTGTCTTTGGTTTTATTCAGGTAAAGAAAATGATTGAGAAATTACCATTAGAAATTCCAGAAAGTAAACTTTTGATTAGCGTGCATACTCGAGCTACAGACTTTCTACAAGAAATTTCAGAATCTGAAACATCTTCCTTACCATCAAATTTGGAGTCAGATCAAGAAAATAAACCTAATGTACCTACTTTAGATAGTGACACTTCTAAATTGCAAGAACACAACTCGGAAGAAAATGACGATGTTGCAGGCGTTAACAGTTGTCAAGATGGAAAACATTTCCCTGAAGAAATTAATGGTTCAAAGCTGAAGTCTGAGCAACAAGATGAACATGATATAACTGCCTCAAATAGTGACTGTTCAAATATGCAAGAAAACAAACTAGAAGAAAATGTTGATGCTGCAGGAGTTAACACTTGTCAAGATGGAAGAAATTTCCCTGAAGAAATTAATGGCTCAAAATTAGAGTCTGAGCAACAACATGATATAACTGCCTTAGATAGTGATTGTTCAAAACTGCAAGAACAAATATTAGAAGAAAATGTTGATGCTTCTAAAGTTGATACTTGTCAAGATGGATCAAAGTCTGAGTCTGAGCAACAAGATGCACCTACTACACCTTCCTCAAATAGTGACTGTTCAAAACTACAAGAAAATAGACTAGAAGAAAATGTTGATGTTGTAGGAGTTGACCTTTGTCAAGATGCAGGGAATTTCCTTGAAGAAAATATTATATCAAAGTTAGAGGCTAAGCAGCAAAATGCACCTAATATACCTGCCTCAGACAGTGGCACTTTTCAACTCCAAGAACATAGACTAGAAGAAAATGTTGATGGTGCAGAAGTTGATCAATCTCCAGCAAAGGGACATGGATTCCAAGAATACAATGGATCATCTATGTCTACTGCTGAAGATGTAGTGCCTCCACAAAACTCAGAAAAATATGGTTCAAGATCACTGGATTCTTTAGGATCTGGGAGACAACGAGAAACACAAGTCATAGAAAAATTCGAACGTGGTGTTTATGTGATACTTGTGTTACAGCCTGATGGTGTCAAAATTTTTAAACAAGTTAAATTCAGTAAGCGAAGGTTCACTGAAAATGAAGCAGAAGAATGGTGGAAGCAAAACAAAGGTAGGGTTCTTAGGAAATATTGTCCATGCCATCAAAACCTAACAACTGGATCATGTAACATAACATCACATGCTAACCAAAATATTGAAGCATCTCCTTCTTAA 1251 0.3573 MTRIFVFGFIQVKKMIEKLPLEIPESKLLISVHTRATDFLQEISESETSSLPSNLESDQENKPNVPTLDSDTSKLQEHNSEENDDVAGVNSCQDGKHFPEEINGSKLKSEQQDEHDITASNSDCSNMQENKLEENVDAAGVNTCQDGRNFPEEINGSKLESEQQHDITALDSDCSKLQEQILEENVDASKVDTCQDGSKSESEQQDAPTTPSSNSDCSKLQENRLEENVDVVGVDLCQDAGNFLEENIISKLEAKQQNAPNIPASDSGTFQLQEHRLEENVDGAEVDQSPAKGHGFQEYNGSSMSTAEDVVPPQNSEKYGSRSLDSLGSGRQRETQVIEKFERGVYVILVLQPDGVKIFKQVKFSKRRFTENEAEEWWKQNKGRVLRKYCPCHQNLTTGSCNITSHANQNIEASPS. 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10718 416 PANTHER PROTEIN BREVIS RADIX-LIKE 1 203 389 IPR044532 -
Seca3g10718 416 MobiDBLite consensus disorder prediction 188 218 - -
Seca3g10718 416 MobiDBLite consensus disorder prediction 44 73 - -
Seca3g10718 416 ProSiteProfiles BRX domain profile. 335 390 IPR013591 -
Seca3g10718 416 MobiDBLite consensus disorder prediction 280 332 - -
Seca3g10718 416 Pfam Transcription factor regulating root and shoot growth via Pin3 335 389 IPR013591 -
Seca3g10718 416 MobiDBLite consensus disorder prediction 295 332 - -
Seca3g10718 416 MobiDBLite consensus disorder prediction 44 124 - -
Seca3g10718 416 MobiDBLite consensus disorder prediction 99 117 - -
Seca3g10718 416 MobiDBLite consensus disorder prediction 200 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10718 Seca-Chr3 253141020 253142858 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10718 312 389 Major Intrinsic Protein MIP AT1G31880 32.099 2.19e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10718 - - lang:109340921 278.87