Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10686 ATGTTAGACAGCACTAGTCCTCAAGCCCATTCCATGTCCCCAAACCCCCCAAATCCCAAGGGTGTAGTGGCAAAGCCCATGTCAAACAACACTCCTCAACCCCCAACCCTCAACACCAAAGCCCCCTCCCGTGGACCAACAAATAAAAATAAAAAAATAGAGTATGATGTTTTTGTTAGCTTTAGGGGGGAGGACATCCGCAAGGATTTTCTTAGCCATTTGATTGAGGCTTTTGGTCAAAAACACATATATGCCTTTGTAGATGACAAACTTGAGAAGGGAGATGAAATATGCCCATCACTTGTTAGAGCAATTGAAGAATCATTAATTTCATTGGTCATATTCTCAGAAAACTATGCTTCTTCAAGTTGGTGTTTGGAAGAACTTGTCAAAATACTTGAATGCAAAGAGAAATATGGTCGGATCATAATACCTATTTTCTACCGTGTACATCCCACGAATATAAGACATCAAAGTGGGAGTTATGAAATTGCACTTGCTGAACATGGAAAAAGAAATGATGCAAAGCTGCTTAAAGCAATTGTCAATCTTGTGTTGAGAAGATTGAGTAAAGATTCGGTTCTCTCAAAAGGACTTGTTGGGATTGAAAAAAAAGTTGCACATGTAGAATCATTATTACAACAAAAGTCAAAAGACATCCGTGTTATTGGAATTTGGGGTATGGGTGGTATTGGAAAAACAACCATCGCAGAGGAAGTATTTAACAAGCTAAAGTATGAATATGATGTGGAAGATGTGATAATTGACACACCAAATGGGTTTTCCAATGATATTGAGCGACGAATTAGTCGGATGAAGGTTCTTATTGTTCTTGATGATGTGAATGATTCAGATCACTTAGAAAAATTATTTGGGAATTTTGATTGTTTTGGATCAAATAGTAGAATAATCGTAACAACCAGAGATAAGCAAGTGCTTATTAATAAAGTTGATGATATATACCCGGTTGGGGTATTGGAGTTTAGTGAAGCACTCAAGCTTTTCAATTTGAATGCCTTTCACCAAAGTCATCTGCAAATGGAGTATAAAGAGCTATCAATGAGGGTGGTCAATTATGCTGATGGCATTCCATTAGTTCTTAAGGTTTTGGGTAATCTTCTTCGTGGAAAAGAGAAGGAAGTATGGGAAAGTCAGCTAAACAAGCTTAAAAAAATGCCAATTGAAAATGTTTATAATGTAATGAGACTGAGTTATGATGATTTAGATCGCAGAGAGAAAAAGATATTCTTGGATCTTGGATGTTTCATCCATGGATTGAATTTGAAGGTAAGAGAAATGGCTTATGAGATTGTACGCCAAGAGTCTAGTGAAGACCCTGGACGTCGCAGCCGATTGTGGGATGTTGATGACATTAATGAAGTATTGGAATATGACAAGGGTACTAGGGCCATTAGAAGCATACAAATGCATTTGTTGGAAATAGGGAACTCAAAGTTGAAGTTAAGTCCTTATATATTTGCTAAGATGAGCAAACTACAATTTCTAGATTTTTACAGGAAGAATGATCAAGACTTCTTTAATCTCCCTAAAAGACTTGTTTCGTTCCCAAAATTTGGTGAATTTGAAGTCAATCTCTCTGACTCTAAATTCTTAAGTGAGCTGCCAAACTTTTCAAAAGCCACAAATCTTGAAGTACTAAATATCAGATGTTGTTCTCGGTTGACTAATGTGCATCGATCTATTTTCTTTCTTGACAATCTTCAGAAATTGAATCTTGGTCTATGCACATCCCTTATCACACTTACAACCTACACCCATTTATGTTGCCTTAGTGATCTTAATGTTGGAGGGTGCAAAGATATTAGGGAATTCTCAGTGACATCAGAGAATATGATAAAACTGAACTTAGGAGGCACATGCATCAAGGCATTGCCATCAACATTTGGATGTCAAAGCAAGCTTGAAATCTTGTCTCTAACTCGCAGTTGCATTGAGAGGTTACCTTCATGCATCAAGAATCTTACAAGATTGCGATGTTTAGATGTAAGATTATGCAGTGAGATTCAGACAATACCAGAGCTTCCCCTGTCCCTTGAAACTTTACGTGCTGAAAAGTGCAAATTACTGAAGACAATGTTGTTACCTTCAGCAGCTAGTGAACAATTCAAGGAAAATAGGAAAAGGGTTGGGTTTTGGAATTGCTTGAACTTGGATGAACATTCCCTCATGACTATTGGCTTGAATGTGCAAATCAACGTGATTAAATTTGCATACCAACATCTATCCACACAAAAACATGATCATGTTGAAAATTATGATGATTACCATGACAATTATCATTCATATCAAGCCATGTACGTGTATCCAGGAAGCAGAATTCCAGACTGGACATTGACTATTGAATCAGATCATGTATGTGTGGTGTATGACCAACGATGTTCTGGCTACCTAACTAGCAGAGCAAAAAAGCAGACAAGGTTTAAAATCCAGGTCACAGCAGAGGCACAACTAAGGCGTCTAGGAAAGGAGAGACGACAGGTGGCATTAAAAGGGTTTGGAGTCAGCCCTGTAAACACCTCAGGACTGGAGTGTGCTTGGTATCATCCCAGTAAGTTGGCTAGTGTGAGTGCATCTGTTTTCTCTCTTCAAAAGCTTGACAAATTGGATCTAAGTCACTGCACTTCCCTTGCTAAACTCCCAAGCAATACCCATTTAAGCTCCCTCAGTTATCTCAACCTTAAATCTTGCAAAAAGATCAGTGAGTTCTCATTGACATCACAGAATATGATGGAATTAGATTTACGATTCACCAATGTCAAAGCATTGTCTGAATCTTTTGGATGTCAAAGCAAGCTTGAAATCCTACATTTAGCATACTGTTACATTAAGAGCTTTCCTTCATGCTTTAAGAATCTTGCAAATATACGATATCTAGATGTAAGATATTGCCAAAAGCTTCAGACTCTACCAGAGCTTCCTTCATCCCTTGAAATTCTACTTGCCCAAGAGTGCACATCACTAAAGACTCTGTTGATCCCTTCAATTGCTGAACAATTCAAGGAAAACAGGAAAAGGGTTGTGTTTTGGAATTGCTTGAAATTGGATGAAAATTCTCTCAAGGCCATTGGTTTGAATGCACAAATCAACATGATGGAATTTGCATACCAACAACATTTATCAGCACCAGAACCCGATTTTGCTGAAAAGAATAATGATGATTACCATGACTCTTGTCAAGTTGTGTATGTGTATCCAGGAAGCAGAGTTTCAGAGTGGTTGGAGTATAGAACAAAAAAGGATTATATAATTATTGATCTCTCTTCTAGCTCTACTACATGTTCCCCTTTGTTGGGCTTCATTTTCTGCTTCGTCCTTGACCGGTTCCCAACACAATGTGATAAAGTGAAATTTGATATCACTATCAGTGTTACTGGTGAGTATGAAGATAAAATGGTCAGTATCGGAACGTACATGTCTAAGTCATCTACCATTATTGAATCTAATCATGTGTGTGTGTGA 3480 0.3779 MLDSTSPQAHSMSPNPPNPKGVVAKPMSNNTPQPPTLNTKAPSRGPTNKNKKIEYDVFVSFRGEDIRKDFLSHLIEAFGQKHIYAFVDDKLEKGDEICPSLVRAIEESLISLVIFSENYASSSWCLEELVKILECKEKYGRIIIPIFYRVHPTNIRHQSGSYEIALAEHGKRNDAKLLKAIVNLVLRRLSKDSVLSKGLVGIEKKVAHVESLLQQKSKDIRVIGIWGMGGIGKTTIAEEVFNKLKYEYDVEDVIIDTPNGFSNDIERRISRMKVLIVLDDVNDSDHLEKLFGNFDCFGSNSRIIVTTRDKQVLINKVDDIYPVGVLEFSEALKLFNLNAFHQSHLQMEYKELSMRVVNYADGIPLVLKVLGNLLRGKEKEVWESQLNKLKKMPIENVYNVMRLSYDDLDRREKKIFLDLGCFIHGLNLKVREMAYEIVRQESSEDPGRRSRLWDVDDINEVLEYDKGTRAIRSIQMHLLEIGNSKLKLSPYIFAKMSKLQFLDFYRKNDQDFFNLPKRLVSFPKFGEFEVNLSDSKFLSELPNFSKATNLEVLNIRCCSRLTNVHRSIFFLDNLQKLNLGLCTSLITLTTYTHLCCLSDLNVGGCKDIREFSVTSENMIKLNLGGTCIKALPSTFGCQSKLEILSLTRSCIERLPSCIKNLTRLRCLDVRLCSEIQTIPELPLSLETLRAEKCKLLKTMLLPSAASEQFKENRKRVGFWNCLNLDEHSLMTIGLNVQINVIKFAYQHLSTQKHDHVENYDDYHDNYHSYQAMYVYPGSRIPDWTLTIESDHVCVVYDQRCSGYLTSRAKKQTRFKIQVTAEAQLRRLGKERRQVALKGFGVSPVNTSGLECAWYHPSKLASVSASVFSLQKLDKLDLSHCTSLAKLPSNTHLSSLSYLNLKSCKKISEFSLTSQNMMELDLRFTNVKALSESFGCQSKLEILHLAYCYIKSFPSCFKNLANIRYLDVRYCQKLQTLPELPSSLEILLAQECTSLKTLLIPSIAEQFKENRKRVVFWNCLKLDENSLKAIGLNAQINMMEFAYQQHLSAPEPDFAEKNNDDYHDSCQVVYVYPGSRVSEWLEYRTKKDYIIIDLSSSSTTCSPLLGFIFCFVLDRFPTQCDKVKFDITISVTGEYEDKMVSIGTYMSKSSTIIESNHVCV. 1160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10686 1159 SMART till_3 54 188 IPR000157 GO:0007165
Seca3g10686 1159 MobiDBLite consensus disorder prediction 1 49 - -
Seca3g10686 1159 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 194 419 IPR027417 -
Seca3g10686 1159 Pfam TIR domain 55 174 IPR000157 GO:0007165
Seca3g10686 1159 SUPERFAMILY L domain-like 481 1024 - -
Seca3g10686 1159 Gene3D Ribonuclease Inhibitor 454 590 IPR032675 -
Seca3g10686 1159 PRINTS Disease resistance protein signature 867 883 - -
Seca3g10686 1159 PRINTS Disease resistance protein signature 222 237 - -
Seca3g10686 1159 PRINTS Disease resistance protein signature 360 374 - -
Seca3g10686 1159 Pfam NB-ARC domain 263 406 IPR002182 GO:0043531
Seca3g10686 1159 Pfam NB-ARC domain 204 249 IPR002182 GO:0043531
Seca3g10686 1159 Gene3D - 257 319 IPR027417 -
Seca3g10686 1159 Gene3D - 194 256 IPR027417 -
Seca3g10686 1159 Gene3D - 326 409 IPR042197 -
Seca3g10686 1159 MobiDBLite consensus disorder prediction 24 46 - -
Seca3g10686 1159 SUPERFAMILY Toll/Interleukin receptor TIR domain 50 170 IPR035897 -
Seca3g10686 1159 Gene3D - 53 193 IPR035897 -
Seca3g10686 1159 ProSiteProfiles TIR domain profile. 53 189 IPR000157 GO:0007165
Seca3g10686 1159 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 55 697 IPR044974 GO:0006952
Seca3g10686 1159 Gene3D Ribonuclease Inhibitor 817 1032 IPR032675 -
Seca3g10686 1159 Gene3D Ribonuclease Inhibitor 592 729 IPR032675 -
Seca3g10686 1159 FunFam Disease resistance protein (TIR-NBS-LRR class) 51 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10686 Seca-Chr3 252757517 252766737 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10686 870 978 WRKY Transcription Factor Family AT4G12020 30.909 2.83e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10686 - - aprc:113850949 875.544