Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10685 ATGAGGATATTCTTTCCTCTTTTTCTTCACTTTTTCTTCAGCTTTGCACTTTCTCTATCCTCCGATGGCCTCGCTCTCCTCTCTCTAAAATCCGCCGTAGACCAACCTGCCGGTGCTTCCGCATTCTCCGACTGGAACGACGGTGACATCACCCCCTGCGGCTGGTCGGGGATCTCCTGCGCGAATATCTCAGGCCTCCCAGAGCCGCGCGTGGTCGGAATCGCCCTCGCCGGAAAATCCCTCCGCGGCTACATTCCCTCGGAGCTCGGCAGCCTCCGCTACCTCCGCCGTCTCAACCTCCACGACAACGACTTCTACGGCGTTGTTCCGGTGCAGCTCTTCAACGCCACCGCACTCCACAGTATCTTCCTCCACCGCAACAACCTCTCCGGTCCATTCCCTCCTTCCGTCTGCACCATTCCCCGCCTCCAAAACCTTGACCTCTCCGACAACTCCTTCTCCGGTCACATCCCCGACGCCGTCAAGAACTGCAAGCAGCTCCAGCGGCTGATCCTCGCCCGGAACAAATTCTCCGGCGATATTCCAACCGGCGTGTGGCCGGAACTCGAGAATCTCATCCAGCTCGACCTCTCCGCAAACGACTTCCAAGGTTTAATCCCGGAAGACATTGGCGACCTAGGATCCCTCTCAGGCACACTGAACCTTTCCTTCAACCACTTCTCCGGTGGAATTCCGAAGTCTCTCGGTAAATTACCGGCAACCGTGAGCTTCGATCTCCGGAATAATAATCTAAGCGGCGAGATTCCCCAAACGGGGTCGTTTTCGAATCAGGGCCCAACCGCATTCCTGGGTAACCCAAACCTCTGTGGGTTTCCGCTTCGGAAATCATGCACTGGTTCGGACCGAGGCTCGGTGGGTCCAGGTTCATCTTCGCGTGAACAGGGTAACCGGGCCAAAGGCCCGAGCCCAGGTTTGATCATTTTGATCTCAGTGGCTGATGCTGCTGCGGTTGCTCTTATTGGACTTGTGGTTGTGTATGTTTATTGGAAGAAGAAGGATGATGGCAATGCGTGTAGCTGCACTGGGAAGAGCAAGTTTGGTGGGGGTGATGATGATGAGAAAGGGAATGTGTGTGCATTCCCATGTATTTGTGGTTCGAAGAATGAAGATGATGAGGGTGAGGTGGAGGTAGATGAGGCAGGGAAAGGGGAAGGGGAATTGGTGACACTTGATAAAGGTTTAAGCATTGAGCTTGATGAGCTTTTGAGGGCTTCAGCGTATGTGTTGGGGAAGAGTGGTTTGGGGATTGTGTACAAGGTGGTGCTGGGGAATGGGGTGCCCGTGGCTGTGAGGAGATTAGGAGAAGGTGGAGAACAGAGGTACAAGGAGTTTGCGGCAGAGGTGCAGGCAATTGGGAAGGTGAAGCACCCTAACATTGTGAGGTTGAGAGCTTATTATTGGGCCCATGATGAGAAGCTTCTCATCAGTGATTTCATCTCCAATGGCAATTTAACCCATGTCCTTCGAGGGAGAAATGGCCAACCATCTCCAAACCTTTCATGGTCCACTAGACTGAAAATCGCAAAAGGAACAGCCAGGGGATTGGCCTATCTCCATGAATGCAGTCCAAGAAAATTTGTCCATGGTGACATCAAACCCTCCAATATCCTACTTGACAATGACTTGCAACCCTACATTTCTGATTTTGGTCTTAACCGGCTGATTAGTATCACTGGAAACAACCCCTCCACTGGTGGCTTCATGGGTGGAGCTCTGCCTTACATGAAGTCATCTCAGAAAGAGAGAACCAACAATTACAAAGCCCCTGAGGCTCGTGTCCCTGGCTGCAGACCCACCCAGAAATGGGACGTATATTCATTTGGAGTTGTATTGCTTGAATTGCTAACTGGGAAGTCACCAGAATCATCTCCCACCACATCAACTTCTATGGAAATCCCTGACTTGGTAAGGTGGGTAAGAAATGGGTTTGATCAAGAAAGCCCATTATCTGAAATGGTTGATCCATCGCTGCTCCAAGAAGTGCGTGCTAAGAAAGAGGTGCTGGCTGTGTTTCATGTAGCCCTTGGATGCACTGAAGGAGACCCTGAGGTCAGGCCTAGAATGAAAACCGTCTCTGAAAATCTTGAAAGGATTGGAACGTAA 2124 0.516 MRIFFPLFLHFFFSFALSLSSDGLALLSLKSAVDQPAGASAFSDWNDGDITPCGWSGISCANISGLPEPRVVGIALAGKSLRGYIPSELGSLRYLRRLNLHDNDFYGVVPVQLFNATALHSIFLHRNNLSGPFPPSVCTIPRLQNLDLSDNSFSGHIPDAVKNCKQLQRLILARNKFSGDIPTGVWPELENLIQLDLSANDFQGLIPEDIGDLGSLSGTLNLSFNHFSGGIPKSLGKLPATVSFDLRNNNLSGEIPQTGSFSNQGPTAFLGNPNLCGFPLRKSCTGSDRGSVGPGSSSREQGNRAKGPSPGLIILISVADAAAVALIGLVVVYVYWKKKDDGNACSCTGKSKFGGGDDDEKGNVCAFPCICGSKNEDDEGEVEVDEAGKGEGELVTLDKGLSIELDELLRASAYVLGKSGLGIVYKVVLGNGVPVAVRRLGEGGEQRYKEFAAEVQAIGKVKHPNIVRLRAYYWAHDEKLLISDFISNGNLTHVLRGRNGQPSPNLSWSTRLKIAKGTARGLAYLHECSPRKFVHGDIKPSNILLDNDLQPYISDFGLNRLISITGNNPSTGGFMGGALPYMKSSQKERTNNYKAPEARVPGCRPTQKWDVYSFGVVLLELLTGKSPESSPTTSTSMEIPDLVRWVRNGFDQESPLSEMVDPSLLQEVRAKKEVLAVFHVALGCTEGDPEVRPRMKTVSENLERIGT. 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10685 707 SMART serkin_6 414 705 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g10685 707 Gene3D Transferase(Phosphotransferase) domain 1 486 707 - -
Seca3g10685 707 SUPERFAMILY L domain-like 20 281 - -
Seca3g10685 707 ProSitePatterns Serine/Threonine protein kinases active-site signature. 533 545 IPR008271 GO:0004672|GO:0006468
Seca3g10685 707 Pfam Leucine rich repeat N-terminal domain 20 60 IPR013210 -
Seca3g10685 707 Gene3D Ribonuclease Inhibitor 189 286 IPR032675 -
Seca3g10685 707 Pfam Leucine rich repeat 141 202 IPR001611 GO:0005515
Seca3g10685 707 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 486 707 - -
Seca3g10685 707 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 189 705 IPR046959 -
Seca3g10685 707 MobiDBLite consensus disorder prediction 286 306 - -
Seca3g10685 707 FunFam Leucine-rich repeat receptor-like protein kinase 393 485 - -
Seca3g10685 707 Gene3D Phosphorylase Kinase; domain 1 404 485 - -
Seca3g10685 707 MobiDBLite consensus disorder prediction 289 304 - -
Seca3g10685 707 CDD STKc_IRAK 416 705 - -
Seca3g10685 707 Pfam Protein kinase domain 415 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g10685 707 Gene3D Ribonuclease Inhibitor 18 188 IPR032675 -
Seca3g10685 707 FunFam Leucine-rich repeat receptor-like protein kinase 191 286 - -
Seca3g10685 707 ProSiteProfiles Protein kinase domain profile. 410 705 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g10685 707 SUPERFAMILY Protein kinase-like (PK-like) 415 702 IPR011009 -
Seca3g10685 707 FunFam Leucine-rich repeat receptor-like protein kinase 19 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10685 Seca-Chr3 252744831 252748345 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10685 16 705 Receptor kinase-like Gene Family AT1G67510 69.929 0.0 969
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca3g10685 Pkinase 1.3e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10685 - - var:108346287 1122.07