Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10683 ATGAAGCAAGTGGTAGGAATGGTGGTTTCCAATAAGATGCAAAAGTCGGTGGTGGTGGCAGTTGATAGACTATTCTACCACAAAGTGTACAACCGATATGTCAAGCGCACCTCTAAATTTATGGCTCATGATGAGCACAATCATTGTAACATTGGTGACCGAGTTCGTCTGGATCCTTCTAGGCCTTTGAGCAAGCGCAAAAATTGGGTGGTTGCTGAAATTCTCAAGAAAGCACGCATATATGTTCCACCCTCCACACCAGTGTCTGAGAGTGTGAGCTCCAGCTCTCAAGCACCTGCATCCTGA 306 0.4608 MKQVVGMVVSNKMQKSVVVAVDRLFYHKVYNRYVKRTSKFMAHDEHNHCNIGDRVRLDPSRPLSKRKNWVVAEILKKARIYVPPSTPVSESVSSSSQAPAS. 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10683 101 PRINTS Ribosomal protein S17 family signature 20 43 IPR000266 GO:0003735|GO:0005840|GO:0006412
Seca3g10683 101 PRINTS Ribosomal protein S17 family signature 62 69 IPR000266 GO:0003735|GO:0005840|GO:0006412
Seca3g10683 101 PRINTS Ribosomal protein S17 family signature 52 62 IPR000266 GO:0003735|GO:0005840|GO:0006412
Seca3g10683 101 Hamap 30S ribosomal protein S17 [rpsQ]. 1 76 IPR019984 GO:0003735|GO:0005840|GO:0006412
Seca3g10683 101 NCBIfam 30S ribosomal protein S17 2 71 IPR019984 GO:0003735|GO:0005840|GO:0006412
Seca3g10683 101 SUPERFAMILY Nucleic acid-binding proteins 2 88 IPR012340 -
Seca3g10683 101 FunFam 30S ribosomal protein S17 1 100 - -
Seca3g10683 101 PANTHER 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER 1 80 IPR000266 GO:0003735|GO:0005840|GO:0006412
Seca3g10683 101 Gene3D - 1 79 IPR012340 -
Seca3g10683 101 Pfam Ribosomal protein S17 6 73 IPR000266 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10683 Seca-Chr3 252738674 252741478 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10683 6 75 Cytoplasmic Ribosomal Protein Gene Family AT4G30800 38.028 3.27e-06 41.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10683 K02961 - zju:107417619 158.688