Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10657 ATGGCGACTAAGGCAACTATTGCAAGTGATTTGGGAAGGGACTGTTCTGAGGAGGACAAGCTAGCATTTAAAGAAGGGTTCAATAGAGTCATTTCACTCTCTGATAGCATGATTCAGTTCATGAAGGTTTTGGAGCATCGAGTGAACAAAATGGATGAACGCATTACTGAGTTGGTTGCAAGAGTTGACAAGTTTAATTTGAATCTTGATACACTTGTCACTGTCACTAATAATATCAACTCTGAAATAGCAAAGTCCACTAAAACTGAATGCTCAACAAAAATGGATCAAAATATTGGGTCCACGCATCCACCTGAGCCTGAACCCATAGTGAGCCCACCCATTAAAAAGGACTGTCCTTTCGATAAGCAAGTCAAGGATGGGCCCATAAAATCTTTAACAGAACTTTCTCCAAAATTCGTTAGGAACATCATTTTTTATGTATCCGATGAGGAAGAGGGAGACGAGATGGAATTTGATCCCACAAACGTTGAGGTTCGTGAAGTCACAGGAACGAAGAAAAAAAGCTCTCCTATTGAAGGCCAGTGTAGCAAAGATGAGAATACATCCCATAACAGAGGCAGAATAACACGTTCCAATTATGTTCGTCGTTGTAGGGGTTCCACACGTGATGACTCAAAGCTCTCTGGGAAGAAGTTATTCCAAACCCCTTCTTCAAAGTCCCCAGGTAAAGGCTCAAAAAGGTTCAGAGCACAAGACGGGAGCACTAACCCGGAAAATGATGCTGCACAGAACCATACACCAGACAGAAAGAAGGATGGTTTGGATGAAAGTACCATAAAGACTCCATCATCCAATATCTTACCAAAGACAATGTTTTCAAGGTTTAGGCCTTCAAATGACATGAAACTCACTGAGAGGGAAGTTAAGATTGTTGCATACATCTTTTCCTACGATGGAGACGAGGATGACATATTAGTGAAGATTTCTGACTTTGTAGCAACAAGGAAAGATTTTGTATCCCTTTGTCCAGATCGACTCGTCAACAAAAAGAAAATGACACTGGCCACACTCAAGGGATCTTGGGCACAATCTCGGAAATCAAACAAGTCAGTTTGGTATTTACCACCAAATTTCACGGATGATGTTCTTGAGGGTTGCACAACCGATGAGTTGATTTCAAAATATGCTAGAATGTGGATGCAGCCCTACCCTCAGCTTAAATATGTAAGGTTTAGCCAAGAAACTTCCAAACACCGTATTGTCATGGAGTTTTCACGAAGCCAGAACAGTTCCATTAACGCTTCAACAAGGGATGATGATGATTTGATTGGGGTTCCTTTCATGGCATCTTGGCTACCATATCGGTCCTCAATCATAATTGCAAAAAAATTGATTTCAAGTTTTCGAGCAGAGTTACCAAAAGAGGTGACTCTAAGAGATCCGGTTGGAAATGAATTTCCTGTTTCCATTGAGGAGTTAACCAACAGACACTGCTTCACAAAGGATGGAGAAGGCCAGATTGATTATCCTAATCCCGCTTTAAAAAAGGAAGATCATGAACAATGTGTCAACCAACCTGTGACAACATCAGTCAGTCATGACGAAGATGTAAGTAGTGAAGCAGATGAAATCATGGGAGTTCTCGGTGCAGACCTATGGACGACTACACTTACTCAGGCACAGGTGGAAGGCAGGAGGGCAGTGGTTATACCAGGGAGGGCTGTGACCACTTACTTCCACAACAGGCCAAAGAAGATCCGAGTTAGATTACCAGATGACCATATCAAATCGTGGGAATTGATTTGGAATCGACGAATCCCGACAGAGTGCAAAATTGGACATGGTGGGAGTGAATTTTGTACCACACATGGGCTGCAAAAGGGAGACCACATTAGGTTTTGGAAATTGGAAAATGAAGCGTTCATCAGAATCGTTCGAACAAAATCCTCAACTTAG 1920 0.4198 MATKATIASDLGRDCSEEDKLAFKEGFNRVISLSDSMIQFMKVLEHRVNKMDERITELVARVDKFNLNLDTLVTVTNNINSEIAKSTKTECSTKMDQNIGSTHPPEPEPIVSPPIKKDCPFDKQVKDGPIKSLTELSPKFVRNIIFYVSDEEEGDEMEFDPTNVEVREVTGTKKKSSPIEGQCSKDENTSHNRGRITRSNYVRRCRGSTRDDSKLSGKKLFQTPSSKSPGKGSKRFRAQDGSTNPENDAAQNHTPDRKKDGLDESTIKTPSSNILPKTMFSRFRPSNDMKLTEREVKIVAYIFSYDGDEDDILVKISDFVATRKDFVSLCPDRLVNKKKMTLATLKGSWAQSRKSNKSVWYLPPNFTDDVLEGCTTDELISKYARMWMQPYPQLKYVRFSQETSKHRIVMEFSRSQNSSINASTRDDDDLIGVPFMASWLPYRSSIIIAKKLISSFRAELPKEVTLRDPVGNEFPVSIEELTNRHCFTKDGEGQIDYPNPALKKEDHEQCVNQPVTTSVSHDEDVSSEADEIMGVLGADLWTTTLTQAQVEGRRAVVIPGRAVTTYFHNRPKKIRVRLPDDHIKSWELIWNRRIPTECKIGHGGSEFCTTHGLQKGDHIRFWKLENEAFIRIVRTKSST. 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10657 639 Pfam B3 DNA binding domain 542 632 IPR003340 GO:0003677
Seca3g10657 639 MobiDBLite consensus disorder prediction 218 250 - -
Seca3g10657 639 Coils Coil 41 61 - -
Seca3g10657 639 Gene3D - 538 639 IPR015300 -
Seca3g10657 639 MobiDBLite consensus disorder prediction 169 279 - -
Seca3g10657 639 SUPERFAMILY DNA-binding pseudobarrel domain 541 636 IPR015300 -
Seca3g10657 639 MobiDBLite consensus disorder prediction 88 123 - -
Seca3g10657 639 MobiDBLite consensus disorder prediction 251 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10657 Seca-Chr3 252335664 252340036 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca3g10657 B3 8.6e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10657 - K10779 cam:101514250 108.227