Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10656 ATGGATAACATTAATGAAAACGTTGGTGAGAATGTTGTTGGGTTGGAAGAAATTGAAAGTGAAGATGATTGTGAGAATGCATTTCATTTTGACTCTCGTGAATTTGTTCTTGGGGTGGATTCTGAGGCAGATTTTGTTGACCTTAATCCTGAGTTGTTAACTGAGGAAAACGTGAAGAATTTAAATTTTCCTAATTTGGATGTTGCTTATAAATTTTACAATAATTGGTATGGAAAATTGAAGGGTTTTTCAGCACGAAAGGGCAAAGAACGTAAAAATGGAATGGAAGAAATTATTGAGAAGACCTATCTTTGCCATAGGGAAGGAAAGAGACCAATTAATACGAATGAAAGGACCGGGAAGAAAAAACGTGAAGCAAAGCCTGAGACAAGGTGTTTATGTCCTGCAAAAATGAAGGTTCGGTTAGATGTACATTCTGGCCGTTGGAACGTGACCAAGTTTTGTGATGCCCATAATCATGAAATGTTGAACCCCAAATACACAGGGATGCTACCGGCTCATAGGAAATTGAGTGAAGCTGATATCTTGGAGATGAATAACATGCGGAATGCAGGTATTACTACACCTCAAATTTATGGGTCATTTGCCAGCCAATCTGGTGGGTACAACAATGTTGGTTTTCGGAAAAGAGATCTTTACAATGAGATTGGTAGGCAAAGAATGTTGCAGCTAAGTGATGCTAAGGGTGCAATTAAGCACCTACGTGAAAGGGAGCAGAATGAAGGGTCAATGTTTTGGAGGCACACGACTGACTCAGAAGGCCGACTCCAGCGATTATTTTGGTGTGACGGTCAGTGCCAAGTTGATTACAAATTATTTGGTGATGTCCTTGCCTTTGATGCCACATACCGTAAGAACAAATATCATTTTCCTTTGGTAGTGTTTTCTGGCATAAACCACCATAATCAAAGCACAATATTTGCTAGTTGCCTAGTTGCAGATGAAATTGAGGAAACTTATGTTTGGGTTTTGGAACAGTTGATGGTGGCAATGAAAGGCAAGATGCCTTCAGCCGTGATAACAGATGGTGATCTTGCTATGCGGAATGCTATCAAAAGAGTGCTTCCTAATGCACACCATAGGCTTTGTGCATGGCACCTGTGTCGTAATGCTGCTAGTAATGTTAAAAATCCTAAGATGGTTTCGATGTTTAGGAAATGTATGTTGGGTGACTATGAGGTGTCTGAGTTTAAACACAGGTGGGAGGTAATGGTGAAGGAATTTCGACTTGAGGAAAACAATTGGGTGAAGGAATTGTATGAGAAAAAGAGGATGTGGGCCACAGCATACATTAGGGGAAATTTCTTTGCCGGGTTTAGGACAACGTCTCGATGTGAGGGGCTTCATGGGCAACTTGGGAAGTTTGTTCACTCCCGGACCGATTTGGTTGGTTTTCTGAAAAATTATGGTCGTTTCCTTGAAGTACTAAGGTATAATGAGTTAGAAGCAGATTTTGAATCAGTACATGGTGAAATGGTCCTTGAGACTAACTTGCATGCACTAGAGAGATCAGCCTCTAAGATTTTCACAAAGGAGGTTTTCATATTGGTACGGCCCGCCCTTGCTAGGGGAAGCACTATGAGGGTCATGGGCTGTACACAGTTGATGTCACAAACCATTTTCACAGTGTCCAAGTATGGTAGATCACAGAAGGAGTGGCAAGTGTCATATATTGCAGAACCACTTTTCCTTAAATGTTCTTGTCAAAGAATGGAATCTTTTGGTCTTCCTTGTGATCACATAATTGGTGTGATGGTACACTTGAACATACAAGAGATGCCGAAGTGTCTTGTGCTCAGTAGGTGGACCATGGGTGTGAAGGATAGTGCTTATGAAATTAGGGATGGACGCAACTCATTTGGGATTCTGTGTTTGATGCACGTTGTGGTTATTTGGACTTTTTGTGTAAGAAGATGA 1938 0.4097 MDNINENVGENVVGLEEIESEDDCENAFHFDSREFVLGVDSEADFVDLNPELLTEENVKNLNFPNLDVAYKFYNNWYGKLKGFSARKGKERKNGMEEIIEKTYLCHREGKRPINTNERTGKKKREAKPETRCLCPAKMKVRLDVHSGRWNVTKFCDAHNHEMLNPKYTGMLPAHRKLSEADILEMNNMRNAGITTPQIYGSFASQSGGYNNVGFRKRDLYNEIGRQRMLQLSDAKGAIKHLREREQNEGSMFWRHTTDSEGRLQRLFWCDGQCQVDYKLFGDVLAFDATYRKNKYHFPLVVFSGINHHNQSTIFASCLVADEIEETYVWVLEQLMVAMKGKMPSAVITDGDLAMRNAIKRVLPNAHHRLCAWHLCRNAASNVKNPKMVSMFRKCMLGDYEVSEFKHRWEVMVKEFRLEENNWVKELYEKKRMWATAYIRGNFFAGFRTTSRCEGLHGQLGKFVHSRTDLVGFLKNYGRFLEVLRYNELEADFESVHGEMVLETNLHALERSASKIFTKEVFILVRPALARGSTMRVMGCTQLMSQTIFTVSKYGRSQKEWQVSYIAEPLFLKCSCQRMESFGLPCDHIIGVMVHLNIQEMPKCLVLSRWTMGVKDSAYEIRDGRNSFGILCLMHVVVIWTFCVRR. 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10656 645 Pfam SWIM zinc finger 568 596 IPR007527 GO:0008270
Seca3g10656 645 Pfam MULE transposase domain 283 377 IPR018289 -
Seca3g10656 645 ProSiteProfiles Zinc finger SWIM-type profile. 560 596 IPR007527 GO:0008270
Seca3g10656 645 PANTHER OS01G0519700 PROTEIN 54 624 - -
Seca3g10656 645 SMART 26again6 571 598 IPR006564 GO:0008270
Seca3g10656 645 Pfam FAR1 DNA-binding domain 72 163 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10656 Seca-Chr3 252324161 252326098 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca3g10656 MULE 1e-27 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10656 - - tpra:123913749 655.21