Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10652 ATGGCTGCAAAAGCTCTTCTTAGTTTCCTCATCTTTCCCATTCTCCTAGTTGCTGCTAAGGCTCTTGCCTTCCAATTCCCTGGATTCAATAACAATGAAATCAATCTCACCCTTGATGGATCTTCCAAAATTGTCAAACCCCAAGGTATACTTGAGCTCACAAACAGAGTAAACAATAAAATAGGCCATGCATTCTATAACCAACCCATTCAAATGTCTGAGAAAACAAATTCTTCCTTTAGTACATGCTTTGTCTTCTCAATTGTACCACCAAGCTCTGGCCCTGGTGGCTTTGGCCTTGCCTTCACCATAGCTCCCTCACCACATTTTCCAGGAGCTGCTGCTGACCATTTTCTTGGTCTTTTTAACCCTTCTAATGATATGAATCCCTCAAATCGCATCTTTGCAGTTGAATTTGACACAGTCAATGGCCACAAAGATGCATCTGACACTGAAGGAAACCATGTTGGGGTAAATATTAATGGCATGCTCTCAGAAAAATCTGAATCAGCAGCTTACTTTAAAGAAGGCACTGATGCAAAGGAAGAGTTTAACATGGAGAAAGCTGATGCTGTCTGTGCTTGGATAGAATATGATGGTGAAACAAATAATTTGAGTGTAACAATAGCCCCTTTATCAGTGCCAAGACCAAGCAAACCACTTATATCTAAGGTCTTTAACAACCTTACGTCTATTATGAAGGGAAGCATGTATGTTGGTTTCTCAGCCTCAACAGGCCAGAGGAAAGCAAGCTCCCATTATATTTTGGGATGGAGTTTTTCAATGAATGGAATTGCCCCTTCACTCAATTTTTCACAGCTTCCAAAGCCACCACAAAAGGTGAAAGATCCATCCTCCTTCCCTTGGGTCAAGGTTGCAGTTGGCATCTTATCTGCTTTGACCTTTACTCTCTTGTGTTTCTTATTTTTTATGGCACTCTATAAGAGACATATGAGATTTGAAACTCTTGAAGACTGGGAGCTGGACTGTCCTCACAGATTCAGATATAGAGATCTTCACATGGCAACCAAGGGGTTCAAAGAGAGCCAGCTAATTGGAGTTGGTGGTTTTGGTTCTGTATACAAAGGTGTCTTAGCTGATACAGGAACTGAGGTTGCTGTTAAAAGGATCAACCGCAGCCCAATGCAAGGAATGAGGGAATTTGCAGCTGAGATTGAAAGCTTAGGGAGATTGAGGCATAAGAATTTGGTTAATCTTCAAGGGTGGTGTAAGAACAAGAATGATCTACTCCTTATCTATGATTACATTCCAAATGGGAGCCTTGATACTCTCCTATTCAAGGGCAATAAAAATTTTGCTCTGAATTGGGACCAGAGGTTCAATATTCTCAAAGGTGTAACTGCTGGGCTATTGTATCTGCATGAAGAGTGGGAGCAAGTGGTGATCCATAGAGATGTGAAATCTAGCAATATTCTGATAGATGGTGACTTGAATGCTCGTTTAGGTGACTTTGGACTAGCAAGGCTCTGTAGTCATGATCAAGTATCACACACAACTAGTGTGGTTGGCACAATTGGGTATATTGCTCCAGAGTTAACTAGGACAGGTAAAGCATCTACAAGCTCTGATGTGTATGCTTATGGAGTCCTACTCCTTGAGGTGGTTGCTGGAACAAGACCAGTTGGCTCAGGTCAGTTTTTCTTGGTGGATTGGGTTATTGAAAATTACCAATTGGGTCAGATTCTTGAAGTAGTTGATCCTAAGCTAGATTCAGTTTATGATGAGGAAGAAGTTGAGTTGGTTCTGAAATTGGGTCTCCTTTGCACTCAATGCAAAGCAGAGTTTAGACCAACCATGAAACAAGTGACTAGGTACCTAAACTTTGATGACCCTCTTCCTGATGTTGATTGGAGATACTCATACTATGATTCTCAGAGCAGAAGAACGGACTCAGGTTTCTTAGAAGTCGTGTCCACAAGTATAACTGCATCTTCTTACAGTTTATCCACCACTGGCAGGAGCACAGTGCCTATAGAAACTGGTAGATAG 2010 0.4149 MAAKALLSFLIFPILLVAAKALAFQFPGFNNNEINLTLDGSSKIVKPQGILELTNRVNNKIGHAFYNQPIQMSEKTNSSFSTCFVFSIVPPSSGPGGFGLAFTIAPSPHFPGAAADHFLGLFNPSNDMNPSNRIFAVEFDTVNGHKDASDTEGNHVGVNINGMLSEKSESAAYFKEGTDAKEEFNMEKADAVCAWIEYDGETNNLSVTIAPLSVPRPSKPLISKVFNNLTSIMKGSMYVGFSASTGQRKASSHYILGWSFSMNGIAPSLNFSQLPKPPQKVKDPSSFPWVKVAVGILSALTFTLLCFLFFMALYKRHMRFETLEDWELDCPHRFRYRDLHMATKGFKESQLIGVGGFGSVYKGVLADTGTEVAVKRINRSPMQGMREFAAEIESLGRLRHKNLVNLQGWCKNKNDLLLIYDYIPNGSLDTLLFKGNKNFALNWDQRFNILKGVTAGLLYLHEEWEQVVIHRDVKSSNILIDGDLNARLGDFGLARLCSHDQVSHTTSVVGTIGYIAPELTRTGKASTSSDVYAYGVLLLEVVAGTRPVGSGQFFLVDWVIENYQLGQILEVVDPKLDSVYDEEEVELVLKLGLLCTQCKAEFRPTMKQVTRYLNFDDPLPDVDWRYSYYDSQSRRTDSGFLEVVSTSITASSYSLSTTGRSTVPIETGR. 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10652 669 FunFam L-type lectin-domain containing receptor kinase V.9 20 268 - -
Seca3g10652 669 ProSiteProfiles Protein kinase domain profile. 346 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g10652 669 Pfam Legume lectin domain 22 275 IPR001220 GO:0030246
Seca3g10652 669 SMART serkin_6 346 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g10652 669 FunFam L-type lectin-domain containing receptor kinase S.4 423 626 - -
Seca3g10652 669 Pfam Protein kinase domain 346 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g10652 669 Gene3D Transferase(Phosphotransferase) domain 1 423 623 - -
Seca3g10652 669 CDD STKc_IRAK 352 614 - -
Seca3g10652 669 SUPERFAMILY Concanavalin A-like lectins/glucanases 21 279 IPR013320 -
Seca3g10652 669 ProSitePatterns Protein kinases ATP-binding region signature. 352 375 IPR017441 GO:0005524
Seca3g10652 669 SUPERFAMILY Protein kinase-like (PK-like) 330 634 IPR011009 -
Seca3g10652 669 CDD lectin_legume_LecRK_Arcelin_ConA 22 264 IPR001220 GO:0030246
Seca3g10652 669 Gene3D Phosphorylase Kinase; domain 1 331 422 - -
Seca3g10652 669 ProSitePatterns Serine/Threonine protein kinases active-site signature. 468 480 IPR008271 GO:0004672|GO:0006468
Seca3g10652 669 PANTHER - 39 615 - -
Seca3g10652 669 FunFam Lectin-domain containing receptor kinase VI.3 331 422 - -
Seca3g10652 669 Gene3D - 20 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10652 Seca-Chr3 252275153 252277162 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10652 15 646 Receptor kinase-like Gene Family AT3G08870 51.318 0.0 641
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Seca3g10652 Pkinase 4.9e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10652 - - gmx:100792854 989.949