Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10645 ATGGCCACTCCTATAGCTTATGAAGAACACCTTCCTGCATCTCCTTATTGGTTAAACAAAGGAGACAACGCATGGCAAATGACAGCAGCAACACTGGTGGGTCTGCAGAGTATGCCAGGCCTAGTGATCCTGTATGCAAGCATAGTCAAAAAGAAATGGGCAGTGAACTCTGCTTTCATGGCCCTTTATGCTTTTGCAGCTGTTCTAATATGTTGGGTCCTTGTGTGTTACCGTATGGCATTTGGAGACAAGCTCTTTCCTTTTTGGGGCAAAGGTGCACCAGCACTAGGCCAAAAGTTTCTCATAAACCGAGCCAAAGTCCCTGAAAGTACCCATTTTTACAATAATGGTACAGCTGAAAGTCCAACATCAGAGCCCTTCTATCCCATGGCTTCCCTTGTCTATTTCCAATTCACTTTTGCTGCTATTACCCTTATCTTGTTAGCTGGATCTGTCCTTGGAAGAATGAACATCAAGGCTTGGATGGCTTTTGTCCCTCTTTGGCTTATTTTCTCTTACACTGTTGGTGCCTTCAGCCTCTGGGGTGGTGGCTTTCTCTACCATTGGGGTGTCATTGATTTCTCTGGTGGCTATGTCATCCATCTTTCCTCTGGAATCGCTGGCTTCACTGCCGCTTATTGGGTTGGACCAAGGGCAAAGAGTGACAGGGAGAGGTTCCCACCAAACAATGTGCTGCTTATGCTTGCTGGTGCTGGGTTGCTGTGGATGGGGTGGTCAGGGTTCAATGGTGGAGCACCATATGCAGCCAACATTGACTCTTCTATTGCTGTGCTTAACACTAACATATGTGCTGCCACTAGCCTACTTATATGGACCTCTCTAGATGTTGTCTTCTTTGGTAAGCCTTCAGTGATTGGAGCTGTTCAGGGTATGATGACAGGACTTGTTTGCATCACCCCAGGAGCAGGACTAGTGCAATCGTGGGCAGCTATAGTGATGGGAATACTAGCTGGGAGCATTCCGTGGGTATCAATGATGATCCTCCACAAGAAGTTAAGTTTCCTACAGAAGGTAGATGACACCCTTGGAGTGTTTCACACACATGCTGTGGCTGGCCTTTTGGGTGGCCTCCTCACAGGTCTCTTAGCAGAACCAGACCTTTGCAGACTCATATTGCCAGTGACCAACTCAAGGGGTGCCTTCTATGGTGGTGGCGGTGGCGTGCAGTTCTTGAAGCAATTGGTGGCAGCACTTTTCATCACTGGATGGAACTTGGTCTCCACCACTCTCATTCTTCTTGCCATACAATTGTTCATACCTTTGAGGATGCCGGACGAACAGCTCGAGATTGGCGATGATGCCGTCCACGGTGAGGAAGCTTATGCCCTTTGGGGTGATGGAGAAAAATATGATGCCACCAAGCATGGATCTTCAAAAGCGGATGAAATTGAAGCAATATCACCCTATGTTATAGGAGCTAGGGGTGTGACCATAAATTTATGA 1464 0.474 MATPIAYEEHLPASPYWLNKGDNAWQMTAATLVGLQSMPGLVILYASIVKKKWAVNSAFMALYAFAAVLICWVLVCYRMAFGDKLFPFWGKGAPALGQKFLINRAKVPESTHFYNNGTAESPTSEPFYPMASLVYFQFTFAAITLILLAGSVLGRMNIKAWMAFVPLWLIFSYTVGAFSLWGGGFLYHWGVIDFSGGYVIHLSSGIAGFTAAYWVGPRAKSDRERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAANIDSSIAVLNTNICAATSLLIWTSLDVVFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILAGSIPWVSMMILHKKLSFLQKVDDTLGVFHTHAVAGLLGGLLTGLLAEPDLCRLILPVTNSRGAFYGGGGGVQFLKQLVAALFITGWNLVSTTLILLAIQLFIPLRMPDEQLEIGDDAVHGEEAYALWGDGEKYDATKHGSSKADEIEAISPYVIGARGVTINL. 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10645 487 Gene3D Ammonium transporter AmtB like domains 5 451 IPR029020 -
Seca3g10645 487 SUPERFAMILY Ammonium transporter 17 430 - -
Seca3g10645 487 PANTHER AMMONIUM TRANSPORTER MEP2 10 461 IPR001905 GO:0008519|GO:0016020|GO:0072488
Seca3g10645 487 Pfam Ammonium Transporter Family 24 448 IPR024041 GO:0008519|GO:0016020|GO:0072488
Seca3g10645 487 ProSitePatterns Ammonium transporters signature. 193 218 IPR018047 GO:0008519|GO:0016020|GO:0072488
Seca3g10645 487 FunFam Ammonium transporter 6 451 - -
Seca3g10645 487 PRINTS Rhesus blood group protein signature 137 153 IPR002229 GO:0005886
Seca3g10645 487 PRINTS Rhesus blood group protein signature 232 250 IPR002229 GO:0005886
Seca3g10645 487 PRINTS Rhesus blood group protein signature 356 372 IPR002229 GO:0005886
Seca3g10645 487 PRINTS Rhesus blood group protein signature 318 336 IPR002229 GO:0005886
Seca3g10645 487 PRINTS Rhesus blood group protein signature 263 285 IPR002229 GO:0005886
Seca3g10645 487 NCBIfam ammonium transporter 22 448 IPR001905 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10645 Seca-Chr3 252169960 252174369 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10645 130 487 Inorganic Solute Cotransporters AT2G38290 77.437 0.0 553
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10645 K03320 - gmx:100798599 874.774