Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10640 ATGGATTGCATTTTTGCTGGTAACTCCACCTCATCTGCAGGGTCATCTTCTAAGGCAAAGAAGAGCAAGGAGAAAAAGTGTGGGAAGAAAAGCAAAGGAGTGATGAAGCTTTCCACTGACCCACAAAGCGTAGCAGCCAGAGAAAGAAGGCATAGAATCAGTGACCGGTTCAAGATCTTGCAGAGCATGGTCCCTGGTGGGAGTAAGATGGACACTGTGTCTATGTTAGAAGAAGCCATTCAGTACGTGAAGTTCCTCAAGACCCAGATTTGGCTTCACCAAACTATGATTAACTTTGTGGATAATCAGTGTTTCCCTAATGAACAGATCATTCCCCTTCAGCAAAATCCATTAGTTGATTCTGATCTGCAGGCTTTACCACAGCTACCACTAGCACAATTCTGCTTCCAAGCTGAAGATGCCACACCTTTGATGCCACTTTGA 444 0.4459 MDCIFAGNSTSSAGSSSKAKKSKEKKCGKKSKGVMKLSTDPQSVAARERRHRISDRFKILQSMVPGGSKMDTVSMLEEAIQYVKFLKTQIWLHQTMINFVDNQCFPNEQIIPLQQNPLVDSDLQALPQLPLAQFCFQAEDATPLMPL. 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10640 147 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 20 117 IPR045843 GO:0003700|GO:0006355
Seca3g10640 147 MobiDBLite consensus disorder prediction 1 17 - -
Seca3g10640 147 FunFam Transcription factor LAX PANICLE 40 103 - -
Seca3g10640 147 Gene3D - 36 95 IPR036638 GO:0046983
Seca3g10640 147 MobiDBLite consensus disorder prediction 1 48 - -
Seca3g10640 147 Pfam Helix-loop-helix DNA-binding domain 47 86 IPR011598 GO:0046983
Seca3g10640 147 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 37 86 IPR011598 GO:0046983
Seca3g10640 147 SMART finulus 43 92 IPR011598 GO:0046983
Seca3g10640 147 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 42 101 IPR036638 GO:0046983
Seca3g10640 147 CDD bHLH_AtIND_like 38 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10640 Seca-Chr3 252122799 252123242 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10640 35 90 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 62.500 5.65e-21 85.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca3g10640 HLH 3.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10640 - - adu:107475363 150.214