Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10627 ATGGACATGGACGTGGACGAAACTTCTGGACCCAAAGAGGGAAAGCCCGTTTTGGTCATCTTAGTAGGAGCACCCGGGAGCGGGAAGTCCACCTTCTGCGAAGAAGTTATGCGTTCACCTACTCGCCCTTGGGTTCGCGTTTGCCAGGACACTATAGGAAATGGTAAAGCAGGAAATAAAGCTCAGTGCTTAAGCAGTGCAGCTAGAGCATTGAAGGATGGGAAGAGTGTATTTATTGACAGGTGCAATCTTGACAGAGAGCAGCGCTCAGACTTTCTAAAGCTAGGTGATGGACCCCAAATAGATATCCATGCAGTTGTACTTGATCTTCCTGCTAAGCTATGTATCTCTCGATCTGTCAAACGAACTGGGCATGAAGGAAATTTGCAGGGTGGAAAAGCTGCTGCAGTTGTGAATAGAATGCTTCAAAAGAAAGAGCTGCCCAAATTAAGTGAAGGCTTTAATAGGATAACATTTTGTCAGAGTGAGAATAATGTCAAAGACGCTATTAATACATACAGCGCACTTGGGCCACTGGATAACCTTCCACATGGCTGCTTTGGCCAGAAGAATCCAGATTCCAAAATTCAAGTTGGTATAATGAAGTTCCTAAAAAAGGCAGAGGTCCCAGTTAATGCTGCACCTAGAGAGAATGCCATTGGAGACTCTACTTCCCAGACTCCTGCACAAATTGATTCCCACTGCAAAGATATGGAAAAAGTTCCCTCAATTCCAGATAATACCAACATAGAGTCAAAGGACTTAGAAGGCCAGGCTGTTGGCTCTGTGGGTTCCCATGACAATCAAGTTTCGTTGGATGATACTCCTACTCTAGCATTTCCTTCTATATCAACATCTGATTTCCAATTCAACCATGAGAAGGCTGCTGATATTATTGTTGAGAAGGTTGCAGAATTTTCAAATAAGCTTGTGAATGCCAGACTTGTTCTAGTTGACTTGACTCATAAGTCAAAGATTCTATCCTTAGTTAAAGCCAAAGCAGCAGAAAAAAGCATTGACACCCAAAAGTTTTTTACCCATGTTGGAGACATTACTCATCTTTATTCTGCAGGAGGTTTGCGCTGTAATGTCATAGCTAATGCTGCGAACTGGCGGTTAAAACCTGGAGGTGGAGGTGTTAATGCAGCAATTTTTAATGCTGCAGGTCCAGAACTGGAGTCTGCAACCAAAGAAAAAGCAAAATCTCTTTCACCTGGGAATGCTGTTGTTGTCCCTCTACCTTCATCTTCTCCTTTGTTCACTAGAGAGGGTGTAACCCATGTAATACATGTTCTTGGACCGAATATGAACCCACAAAGACCAAATTATCTGAACAATGATTATAATAAAGGCTGCAAAATTCTCCGAGATGCATATGCTTCACTTTTTGAAGGTTTTGCATCAATTGTGAGGAACCAGGCTGAGCAGCCTAGGGGAAAAAAAGAAAACCTTGGAAAAAAGTCTTTGGAGTTGCAGGATCAGTCTGACTGTACTAGAAATCCTTTTGCAAATAATGATCAAAAGAGTAAGAGAGATGCTGATCATGGATCAGAAAAAAGCAAGAAATACAAGGGAACTCTGGATGGTTTTGGGTTGACCTTTACAGATTCTAGGGATAAAAAGGTAGATTCAGAGCGTAGAAGAACTGATGAGAGCATGAGTAAGGCTTGGGGATCATGGGCTCAAGCTCTTCACCAAATAGCTATGCATCCTGAAAAGCATAAGGATGACTTACTTGAAATTTCAGAAGATGTTGTTGTATTGAATGATCTGTATCCTAAGGCACAGAAGCATGTTCTGGTATTGGCACGAACTGAAGGTCTTGATAGCCTGGCAAATGTCCAAAATGAGCACCTTCAGTTGTTGAAGAAGATGCATGCTGTGGGTTTAAAGTGGGCTGAGAAGTTCTTGCAAGAGAGTGCTTCACTTGTATTTCGTCTTGGATATCACTCGGTATGCATAGTATATATTCGGGAACCACTTTTTCCTCTCCCTCGAGCCAGAAAAAGGAAAGAATAA 2019 0.4215 MDMDVDETSGPKEGKPVLVILVGAPGSGKSTFCEEVMRSPTRPWVRVCQDTIGNGKAGNKAQCLSSAARALKDGKSVFIDRCNLDREQRSDFLKLGDGPQIDIHAVVLDLPAKLCISRSVKRTGHEGNLQGGKAAAVVNRMLQKKELPKLSEGFNRITFCQSENNVKDAINTYSALGPLDNLPHGCFGQKNPDSKIQVGIMKFLKKAEVPVNAAPRENAIGDSTSQTPAQIDSHCKDMEKVPSIPDNTNIESKDLEGQAVGSVGSHDNQVSLDDTPTLAFPSISTSDFQFNHEKAADIIVEKVAEFSNKLVNARLVLVDLTHKSKILSLVKAKAAEKSIDTQKFFTHVGDITHLYSAGGLRCNVIANAANWRLKPGGGGVNAAIFNAAGPELESATKEKAKSLSPGNAVVVPLPSSSPLFTREGVTHVIHVLGPNMNPQRPNYLNNDYNKGCKILRDAYASLFEGFASIVRNQAEQPRGKKENLGKKSLELQDQSDCTRNPFANNDQKSKRDADHGSEKSKKYKGTLDGFGLTFTDSRDKKVDSERRRTDESMSKAWGSWAQALHQIAMHPEKHKDDLLEISEDVVVLNDLYPKAQKHVLVLARTEGLDSLANVQNEHLQLLKKMHAVGLKWAEKFLQESASLVFRLGYHSVCIVYIREPLFPLPRARKRKE. 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10627 672 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 160 IPR027417 -
Seca3g10627 672 Pfam Macro domain 366 448 IPR002589 -
Seca3g10627 672 MobiDBLite consensus disorder prediction 476 493 - -
Seca3g10627 672 MobiDBLite consensus disorder prediction 476 524 - -
Seca3g10627 672 FunFam Transcription factor bHLH140 6 175 - -
Seca3g10627 672 Pfam AAA domain 18 144 - -
Seca3g10627 672 SUPERFAMILY Macro domain-like 325 464 IPR043472 -
Seca3g10627 672 Pfam Scavenger mRNA decapping enzyme C-term binding 566 652 - -
Seca3g10627 672 Gene3D - 555 656 IPR036265 -
Seca3g10627 672 FunFam Transcription factor bHLH140 324 471 - -
Seca3g10627 672 Gene3D Leucine Aminopeptidase, subunit E, domain 1 268 334 IPR043472 -
Seca3g10627 672 PANTHER APRATAXIN-RELATED 278 652 - -
Seca3g10627 672 SMART YBR022w_8 343 622 IPR002589 -
Seca3g10627 672 MobiDBLite consensus disorder prediction 505 524 - -
Seca3g10627 672 Gene3D - 3 175 IPR027417 -
Seca3g10627 672 ProSiteProfiles Macro domain profile. 331 672 IPR002589 -
Seca3g10627 672 Gene3D Leucine Aminopeptidase, subunit E, domain 1 335 475 IPR043472 -
Seca3g10627 672 SUPERFAMILY HIT-like 551 651 IPR036265 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10627 Seca-Chr3 251936902 251940976 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10627 13 652 C2H2 Transcription Factor Family AT5G01310 57.031 0.0 724
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10627 K10863 - gmx:100786762 1092.03