Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10603 ATGGAAGCAGGGCATCATCACCATCTTCATCATCATCATCAGAATATCAACGTGCAACAGCAAGATGTCACCGATAGGTTCCCTCAGTGGAGCATCCAAGAAACAAAAGAATTCCTTATGATCCGAGCAGAGCTCGATCAGACTTTCATGGAGACAAAACGCAACAAACAATTGTGGCAAATCATCTCCAATCACATGAACCAAAAGGGTTTTCATCGAAGTGCAGAACAGTGCAAGTGCAAGTGGAAAAACCTCGTTACCCGCTATAAGGGATGTGAAACAATGGAAGAAGAAGCCATGAGACAGCAATTCCCATTTTACAATGAACTTGAGGCGATTTTCACTGCAAGGATGCAGAGAATGTTGTTGCAGGGTCATCCGGCGACAACAATTTTCACTGCAAGGATGCAGAGAATGTTGTGGGCTGAAGCTGGAGGTGGTTCCAAGAGGAAGCTTTCATCGGATGATGAAGATGAAGAGAGTACTGAGGCTGCTCAGAAGGGTGGGGGTAAAAAGAAGAAAAAGGCTAAGATAGTTAGTGGTGGAAGTAACAATTTGAAGGAGATTCTTGAGGAGTTTATGAGGCAACAGATGCAAATAGAAGCGCAGTGGATGGAAGCTTTTGAGGCCAGAGAGAATGAGAGGAGGTTGAAGGAGATGGAGTGGAGACAACAAATGGAAGTGTTGCAGAATGAGAGGATAATGTTGGATCAGAGATGGAGAGAAAGGGAGGAACAAAGGAGAATTAGAGAAGAAGCTAGGGCTGACAAAAGGGATGCTCTAATCACTGCTCTGCTAAACAAACTACAAAGGGATGAGATATAA 825 0.44 MEAGHHHHLHHHHQNINVQQQDVTDRFPQWSIQETKEFLMIRAELDQTFMETKRNKQLWQIISNHMNQKGFHRSAEQCKCKWKNLVTRYKGCETMEEEAMRQQFPFYNELEAIFTARMQRMLLQGHPATTIFTARMQRMLWAEAGGGSKRKLSSDDEDEESTEAAQKGGGKKKKKAKIVSGGSNNLKEILEEFMRQQMQIEAQWMEAFEARENERRLKEMEWRQQMEVLQNERIMLDQRWREREEQRRIREEARADKRDALITALLNKLQRDEI. 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10603 274 FunFam Zinc finger and SCAN domain-containing 20 30 91 - -
Seca3g10603 274 CDD GT1 28 93 - -
Seca3g10603 274 MobiDBLite consensus disorder prediction 1 20 - -
Seca3g10603 274 Gene3D - 30 91 - -
Seca3g10603 274 SMART sant 26 88 IPR001005 -
Seca3g10603 274 MobiDBLite consensus disorder prediction 149 169 - -
Seca3g10603 274 Coils Coil 183 203 - -
Seca3g10603 274 MobiDBLite consensus disorder prediction 147 178 - -
Seca3g10603 274 Pfam Myb/SANT-like DNA-binding domain 29 113 IPR044822 -
Seca3g10603 274 ProSiteProfiles Myb-like domain profile. 30 86 IPR001005 -
Seca3g10603 274 PANTHER FI21293P1 11 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10603 Seca-Chr3 251728016 251733476 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10603 5 272 Trihelix Transcription Factor Family AT2G38250 51.246 4.52e-72 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Seca3g10603 Myb_DNA-bind_4 1.9e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10603 - - gmx:100818384 349.747