Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10600 ATGGCGTCCAGCCCCCGCACCGTCGAAGAGATCTTCAAGGACTTCAGCGCTCGAAGAGAAGCCATCGTTCGTGCTTTATCTCAAGATGTTGATGAATTCTATGGACTCTGTGATCCAGATAAGGAGAACTTGTGCCTCTATGGGCATTCAAATGAAACATGGGAAGTGACTTTGCCAGCAGAGGAGGTTCCACCAGAGCTTCCAGAGCCGGCTCTCGGAATCAATTTTGCTAGGGATGGCATGAACCGCAGGGACTGGCTTTCTCTGGTTGCTGTGCACAGTGATTCGTGGTTGCTTTCTGTGGCCTTTTATCTTGGAGCTCGTCTTAACCGCAATGAAAGTGGCAGGAAACGTTTATTTAGCTTGATCAATGATCTGCCTACTGTTTTTGAAGTTGTAACTGAGAGGAAGCCAATAAAGGACAAGCCTACTGCAGACAGTGGAAGCAAATCTCGGGGCAGCACCAAGGTTTGTGTTGTTGTTGCATATAGATCAAGTGATGGGCAAGTTAAAAGCAACCCAAAGTTCGCAGATGAAGGTTATGAGGAGGATGAAGATGAGCATAGTGAAACCCTTTGTGGGAGCTGTGGTGGAAATTACAATGCGGATGAATTTTGGATTGGCTGTGATATATGTGAGAGGTGGTTCCATGGGAAATGTGTGAAGATTACTCCTGCAAAGGCTGAGAGCATAAAGCAATACAAATGCCCATCATGCATGAGGCGGGGCAGGCCCTAG 738 0.4729 MASSPRTVEEIFKDFSARREAIVRALSQDVDEFYGLCDPDKENLCLYGHSNETWEVTLPAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNESGRKRLFSLINDLPTVFEVVTERKPIKDKPTADSGSKSRGSTKVCVVVAYRSSDGQVKSNPKFADEGYEEDEDEHSETLCGSCGGNYNADEFWIGCDICERWFHGKCVKITPAKAESIKQYKCPSCMRRGRP. 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10600 245 ProSitePatterns Zinc finger PHD-type signature. 193 239 IPR019786 -
Seca3g10600 245 PANTHER CPG BINDING PROTEIN 4 241 IPR045104 GO:0006355|GO:0042393
Seca3g10600 245 FunFam PHD finger alfin-like protein 185 241 - -
Seca3g10600 245 CDD PHD_AL_plant 192 242 IPR044104 -
Seca3g10600 245 ProSiteProfiles Zinc finger PHD-type profile. 190 242 IPR019787 -
Seca3g10600 245 Pfam PHD-finger 193 241 IPR019787 -
Seca3g10600 245 SUPERFAMILY FYVE/PHD zinc finger 181 243 IPR011011 -
Seca3g10600 245 Pfam Alfin 7 134 IPR021998 GO:0006355|GO:0042393
Seca3g10600 245 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 240 IPR013083 -
Seca3g10600 245 SMART PHD_3 192 240 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10600 Seca-Chr3 251626804 251630378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10600 2 244 Alfin-like Transcription Factor Family AT5G05610 75.102 5.87e-115 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Seca3g10600 Alfin 2.6e-65 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10600 K26274 - gmx:100793126 447.588