Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10599 ATGGGCGTCGATTACTATAGAATTCTCCAGGTAGATCGAGGTGCCAAAGATGATGATCTCAAAAAAGCTTATCGCAAGCTTGCCATGAAGTGGCACCCTGACAAGAACCCTAACAACAAAAAAGATGCTGAAGCCAAATTCAAGCAAATCTCAGAAGCCTACGATGTTTTGAGTGATCCCCAAAAGAGAGCGGTGTATGATCAGTATGGTGAGGAGGGATTGAAGGGGCAGGTGCCTCCCCCCGGTGCCGGTGGATTTTCCGGTGGTAGTGATGGCGGGCCGACGATGTTCCGGTTCAACCCGAGAAGTGCAGATGATATATTTTCGGAGTTCTTTGGGTTTTCCAGCCCCTTTGGTGGAATGGGTGACATGGGTGGTCGTGCTGGTGCATCTGGCTTTCCCAGGGGCATGTTTGGGGATGACATTTTCACTTCTTTTAGGAGTGCGGCTGGAGAAGGCTCTGCCAATGTGCCAAGGAAAAGTGCACCCATAGAGAGAACATTGCAATGCAGTTTGGAGGACTTGTACAAAGGGACTACAAAAAAAATGAAGATTTCCAGGGATGTTACTGATGCCAGTGGGGAACTAATCTTTAGTATTTCTTTATTGCATAGGAGGCCAACCACAGTAGAGGAAATTCTAACCATTGAGATCAAGCCGGGTTGGAAGAAAGGAACAAAAATAACTTTTCCAGAGAAGGGAAATGAACAGAGAGGAGTTATACCTGCAGACCTTGTTTTTATTATTGATGAGAAGCCTCATAGTGTCTTCAAGAGGGATGGCAATGATCTTGTTATCACCCAGAAGATATCTCTTGTAGAAGCACTGACAGGTTACACAGCACAGTTGACAACCCTTGATGGTAGGAATCTTAACGTCTCCATCAACTCCATCATTAGTCCAACATATGAAGAAGTTATTAAAGGAGAGGGTATGCCTATTCCTAAGGAACCTTCCAAAAAGGGAAACTTGAGAATCAAGTTTAATATCAAGTTCCCCTCCAGACTTACATCGGAGCAGAAAACTGGCATTAAGCGATTATTGACATCTTCATAA 1056 0.446 MGVDYYRILQVDRGAKDDDLKKAYRKLAMKWHPDKNPNNKKDAEAKFKQISEAYDVLSDPQKRAVYDQYGEEGLKGQVPPPGAGGFSGGSDGGPTMFRFNPRSADDIFSEFFGFSSPFGGMGDMGGRAGASGFPRGMFGDDIFTSFRSAAGEGSANVPRKSAPIERTLQCSLEDLYKGTTKKMKISRDVTDASGELIFSISLLHRRPTTVEEILTIEIKPGWKKGTKITFPEKGNEQRGVIPADLVFIIDEKPHSVFKRDGNDLVITQKISLVEALTGYTAQLTTLDGRNLNVSINSIISPTYEEVIKGEGMPIPKEPSKKGNLRIKFNIKFPSRLTSEQKTGIKRLLTSS. 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10599 351 SUPERFAMILY HSP40/DnaJ peptide-binding domain 164 254 IPR008971 GO:0006457|GO:0051082
Seca3g10599 351 MobiDBLite consensus disorder prediction 72 95 - -
Seca3g10599 351 FunFam DnaJ subfamily B member 13 3 122 - -
Seca3g10599 351 FunFam Dnaj homolog subfamily b member 160 252 - -
Seca3g10599 351 SUPERFAMILY HSP40/DnaJ peptide-binding domain 256 342 IPR008971 GO:0006457|GO:0051082
Seca3g10599 351 CDD DnaJ 4 59 IPR001623 -
Seca3g10599 351 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Seca3g10599 351 PRINTS DnaJ domain signature 24 39 IPR001623 -
Seca3g10599 351 PRINTS DnaJ domain signature 42 62 IPR001623 -
Seca3g10599 351 PRINTS DnaJ domain signature 62 81 IPR001623 -
Seca3g10599 351 PRINTS DnaJ domain signature 6 24 IPR001623 -
Seca3g10599 351 CDD DnaJ_C 162 336 - -
Seca3g10599 351 Gene3D - 163 252 - -
Seca3g10599 351 Pfam DnaJ domain 4 67 IPR001623 -
Seca3g10599 351 Pfam DnaJ C terminal domain 164 333 IPR002939 -
Seca3g10599 351 SMART dnaj_3 3 62 IPR001623 -
Seca3g10599 351 Gene3D - 254 334 - -
Seca3g10599 351 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 348 - -
Seca3g10599 351 FunFam DnaJ subfamily B member 13 254 334 - -
Seca3g10599 351 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Seca3g10599 351 Gene3D DnaJ domain 3 123 IPR036869 -
Seca3g10599 351 SUPERFAMILY Chaperone J-domain 3 97 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10599 Seca-Chr3 251617726 251622438 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10599 5 69 C2H2 Transcription Factor Family AT1G74250 36.232 6.13e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10599 K09510 - gmx:100777607 574.318