Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10592 ATGAGACATGGCCGAACCGCACATAACATGTCATCTTCTTCTTTGCGCAAGAAATCTGACCTCACTCTTGTCTCCAACCTTCGTTCTGGTTTCCTCAAAAACATCCTCGTTAACTTCCAAGAGGTTATTCTCGGAACCAAGCTTTCCATTCTCTTCCCAGCCATTCCATTTGCCATCATTGCTCAATGCTATGGCTTTGCACAACCTTGGATTTTTGCTTTGAGCTTACTTGGACTTACCCCACTTGCTGAACGAGTCAGCTTCTTGACAGAACAGGTTGCTTATTACACAGGTTCCACAGTGGGAGGACTTTTGAATGCAACATGTGGGAATGCTACTGAGCTCATCATTGCAATTTTTGCCCTTAGCAATAACAAAATTGCTGTGGTCAAGTACTCTCTCCTGGGTTCTATCCTTTCAAACCTTCTTTTAGTTCTTGGAACCTCTCTGTTATGTGGTGGCCTTGCAAACCTTAGACAGGAACAAAAATATGATAGAAGACAGGCAGATATGAACTTGCTTATGCTTCTTCTGGCATTTTTGTGCCACTTGCTTCCAATGCTGTTCCAATATGGAGGAGGTGCCTCAGCAGCTGTCACTGCAGACTCATCTCTGAAGTTGTCAAGAGTTGCTAGCATTGTGATGGTGATTGCATATATTGCTTACCTTATCTTCCAACTGTGGACTCACCGACAATTATTTGAAGCCCAGGATGTATGTTTCTTTGATAGTGAAGAAGATGATGAAGAGGGTGACAATGCTTCAGAAGAAGCAGTAATAGGATTTTGGAGTGGATTTGCTTGGCTGGTTGGGATGACTGTGTTTATTGCTTTGCTATCTGAATATGTGGTGGAGACAATTGAGGATGCATCAGATTCATGGGGTCTGTCTGTCAGTTTCCTCAGTATAATTTTGCTACCAATAGTTGGCAATGCAGCTGAACATGCAGGAGCTATCATATTTGCTTTCAAGAACAAGCTGGACATATCATTGGGTGTTGCTTTGGGTTCTGCAACTCAAATTGGCATGTTTGTGGTTCCCCTATGTGTGATTGTTGCTTGGATTCTTGGTATCAAAATGGATCTCAACTTTAACCTCCTAGAGACAGGTTCTCTTGCTTTGGCAATAATAACCACAGCCTTCACATTACAGGATGGAACTTCTCACTACATGAAAGGCCTTATTCTCCTGCTTTGCTACATTGTTATTGGGGCCTGCTTTTTTGTACAAAGAACACCCTCCAGCAGTAAGCATGATATGCAACATTGTTTTGATGTCCCATAA 1284 0.4245 MRHGRTAHNMSSSSLRKKSDLTLVSNLRSGFLKNILVNFQEVILGTKLSILFPAIPFAIIAQCYGFAQPWIFALSLLGLTPLAERVSFLTEQVAYYTGSTVGGLLNATCGNATELIIAIFALSNNKIAVVKYSLLGSILSNLLLVLGTSLLCGGLANLRQEQKYDRRQADMNLLMLLLAFLCHLLPMLFQYGGGASAAVTADSSLKLSRVASIVMVIAYIAYLIFQLWTHRQLFEAQDVCFFDSEEDDEEGDNASEEAVIGFWSGFAWLVGMTVFIALLSEYVVETIEDASDSWGLSVSFLSIILLPIVGNAAEHAGAIIFAFKNKLDISLGVALGSATQIGMFVVPLCVIVAWILGIKMDLNFNLLETGSLALAIITTAFTLQDGTSHYMKGLILLLCYIVIGACFFVQRTPSSSKHDMQHCFDVP. 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10592 427 FunFam Vacuolar cation/proton exchanger 99 248 - -
Seca3g10592 427 FunFam Vacuolar cation/proton exchanger 253 409 - -
Seca3g10592 427 NCBIfam calcium/proton exchanger 33 408 - -
Seca3g10592 427 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 3 412 IPR004713 GO:0006812|GO:0008324|GO:0016020
Seca3g10592 427 NCBIfam calcium/proton exchanger 53 408 IPR004798 GO:0006816|GO:0015369
Seca3g10592 427 Gene3D - 98 239 IPR044880 -
Seca3g10592 427 Gene3D - 240 408 IPR044880 -
Seca3g10592 427 Pfam Sodium/calcium exchanger protein 69 228 IPR004837 GO:0016020|GO:0055085
Seca3g10592 427 Pfam Sodium/calcium exchanger protein 265 403 IPR004837 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10592 Seca-Chr3 251545274 251548184 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10592 1 415 Antiporters AT2G38170 74.101 0.0 593
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10592 K07300 - gmx:100782052 646.736