Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10566 ATGCTATGTTTTGAGGATATTTATTTACATATTTGTTCTTATCAGGATCCTCCTCGGGAGGAAGTTCATAAAGCAATTGAAGATTGTAAGGAAGCTGGAATTAGAGTCATGGTAATAATTGGAGATAATAAGTCAATAGTTGAGGCTATTTGTAGGGAAATCAAATTGTTCTCTAGAGATAAGGACCTTACAGGGGCAATGTTTGACAGACACAAGCAAGAAATTGTGAGACTACTCAAGGAAATGGGGGAGATTGTTGCAATGACTGGAGATGGTGTGAATGATGTACCTGCACTTAAGCTTGCTGACATAGGGATTGCTATAGGCATAACTGGAACAGAGAATATGTTAAGGAAGCTGAGATTACCTCTTTCGCTGATGATGATGTCTCCTCACATTCATCTGCAGACAAGAAAGGATATTTGGACCCCAGATTCATTTATTGTCTGTGATGATCATTCGAGCAAACACTGTTTGAGGAATGCCCGCTTGGATGCCATTGATTGGATTTTCAACGTTAGTTTTCATTAG 531 0.3898 MLCFEDIYLHICSYQDPPREEVHKAIEDCKEAGIRVMVIIGDNKSIVEAICREIKLFSRDKDLTGAMFDRHKQEIVRLLKEMGEIVAMTGDGVNDVPALKLADIGIAIGITGTENMLRKLRLPLSLMMMSPHIHLQTRKDIWTPDSFIVCDDHSSKHCLRNARLDAIDWIFNVSFH. 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10566 176 Gene3D - 18 65 IPR023214 -
Seca3g10566 176 Gene3D - 70 114 IPR023214 -
Seca3g10566 176 NCBIfam HAD-IC family P-type ATPase 6 109 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca3g10566 176 SUPERFAMILY HAD-like 8 114 IPR036412 -
Seca3g10566 176 PRINTS P-type cation-transporting ATPase superfamily signature 89 108 - -
Seca3g10566 176 PRINTS P-type cation-transporting ATPase superfamily signature 10 21 - -
Seca3g10566 176 PRINTS P-type cation-transporting ATPase superfamily signature 32 42 - -
Seca3g10566 176 PANTHER CALCIUM-TRANSPORTING ATPASE 12 114 - -
Seca3g10566 176 Pfam haloacid dehalogenase-like hydrolase 9 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10566 Seca-Chr3 251273267 251274455 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10566 7 114 Primary Pumps ATPases(2) AT4G00900 58.394 1.16e-45 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10566 K01537 - gmx:100800498 156.762