Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10563 ATGCCTTCCTCTTCCACAACCATTGTTTCTAAATGCATAGTCTACCCAGAGCACAAATCAACATTGAAACCCCTTAAGCTTTCTGTCTCTGACCTTCCAATGCTTTCATGTCACTACATCCAAAAGGGTGTGTTACTCACTGCCCCACCTTACTCCTTTGATGACTTCATTCTCACTCTCAAACACTCCCTCTCCGTCGCACTCTCCCACTTCCCTGCCCTCGCCGGCCGCCTCACGACTGATTCCGACGGCTACGTTTACATAACCTGCAACGACGCCGGCGTCGAATTCATCCACGCCAAGGCCAAGCACCTCACCCTAAACGCCGTCGTTTCACCCTCCCTCGTTGACGTACACCCTTGCTTCAAGGAGTTCTTTGCCTATGACATGACAGTTTCTTACTCCGGTCACCAAATTCCCCTCGCCGCCGTCCAGGTCACCGAGCTCGCCGACGGCGTTTTCGTCGGCTGCACCGTCAACCACTCCGTCACCGACGGTACCTCCTTCTGGCACTTCTTCAACACCTTCGCCGCCGCCGCCAAGAGCGGCGGCGCGAAGAAGATCACGAAGTCGCCGGACTTCACCCGTGACACCGTCTTCAACTCTGAATCCGTCCTCCCCGTCCCCGCCGGCGGACCCGCCGTCACCTTCGACGTCGACGCACCTCTCCGGGAGCGAGTCTTTCACTTCTCCCGAGAAGCCATTCAGAAACTCAAACAGAGAGCCAACGGCAACGGCAACGGAATCCCGGATTTCGCGGAAGTAATAGGTAAACAGGTGAATGACGGTTGGAAAATCGTTAACTGTAACGGTAACGGAAAGACAACGCCCGTTGCTAACGGTAACGGAAGGAACGAGATCTCATCGTTTCAATCGTTGTCCGCTCAGCTATGGCGTTCGGTGACGCGTGCCAGGAAATTGGACCCTTCAAAAACGTCGACGTTTCGCATGGCCGTGAATTGCCGCCACAGATTGGAACCAAGGATGGACCCGTTTTACTTCGGCAATGCGATTCAGAGCATCCCAACCGTTGCTACTGCCGCTGACATAGTCTCTCGCGATCTACGCTTCTGCGCAGAATTGCTTCATCAAAACGTCGTCGCACACGACGACGCTACGGTGCGCCGCGGCATACAGGATTGGGAGAAGGCACCGAGACTGTTCCCGCTTGGGAATTTCGACGGCGCAATGATCACCATGGGTAGTTCCCCGCGTTTTCCCATGTACGACAACGACTTCGGGTGGGGCCGGCCCTTGGCCATTCGAAGTGGCAAGGCGAACAAGTTTGACGGCAAGATCTCTGCGTTTCCTGGAAGAGAAGGAAACGGTAGCGTTGATCTTGAGGTCGTTTTGACCCCCGAAACGATGGCCGGGCTCGAAAACGACATGGAGTTTATGCAGTACGTGACGCCAACCGAGGAGTGTGTGGTATAA 1434 0.5509 MPSSSTTIVSKCIVYPEHKSTLKPLKLSVSDLPMLSCHYIQKGVLLTAPPYSFDDFILTLKHSLSVALSHFPALAGRLTTDSDGYVYITCNDAGVEFIHAKAKHLTLNAVVSPSLVDVHPCFKEFFAYDMTVSYSGHQIPLAAVQVTELADGVFVGCTVNHSVTDGTSFWHFFNTFAAAAKSGGAKKITKSPDFTRDTVFNSESVLPVPAGGPAVTFDVDAPLRERVFHFSREAIQKLKQRANGNGNGIPDFAEVIGKQVNDGWKIVNCNGNGKTTPVANGNGRNEISSFQSLSAQLWRSVTRARKLDPSKTSTFRMAVNCRHRLEPRMDPFYFGNAIQSIPTVATAADIVSRDLRFCAELLHQNVVAHDDATVRRGIQDWEKAPRLFPLGNFDGAMITMGSSPRFPMYDNDFGWGRPLAIRSGKANKFDGKISAFPGREGNGSVDLEVVLTPETMAGLENDMEFMQYVTPTEECVV. 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10563 477 SUPERFAMILY CoA-dependent acyltransferases 59 182 - -
Seca3g10563 477 Gene3D - 6 207 IPR023213 -
Seca3g10563 477 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 8 467 - -
Seca3g10563 477 Pfam Transferase family 6 466 - -
Seca3g10563 477 Gene3D - 212 462 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10563 Seca-Chr3 251239023 251240456 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10563 59 461 Monolignol Biosynthesis Gene Families AT5G48930 26.651 5.77e-35 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10563 - - gmx:100780358 810.446