Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca3g10562 | ATGAACAGGGGAATTGAAGTTCTTTCTCCAGCTTCTTATCTTCAGAATTCCAATTGGTTGTTCCAGGAAAGTAAAGGAACCAAATGGACACCAGAAGAGAACAAAAGGTTTGAGAGTGCCTTAGCTTTATTTGATAAGGACACTCCAGATCGTTGGGTGAAGGTGGCAGCTATGGTTCCAGGTAAGACTGTTGGTGATGTGATCAAACAGTACAGAGAACTGGAAGAAGATGTGAGTGTCATTGAATCTGGGTTGATCCCAATTCCTGGGTACACTACTGGTTCTTTCACGTTGGAATGGGTCAACGATCAAGACTTTGATGAGTTCAACCAATTCTATAGTGTTTGTGGCAAAAGAGGTACTTCCACTCGGCCATGTGAGCAGGAAAGGAAGAAAGGGGTGCCATGGACTAAAGAGGAGCACAGGCAATTTCTGTTGGGTCTGAAGAAGTATGGTAAAGGGGATTGGAGAAGCATATCTCGCAATTTTGTGACCACAAGGACACCAACCCAGGTTGCAAGTCATGCTCAGAAGTATTTCATTAGGCAGCTTACAGGAGGGAAGGATAAGAGGAGATCAAGTATCCATGACATCACAGTGGTCAATCTTCCAGAAACAAAATCAGGACCAGACAGTAACTTACCTCCTTCTCAAGATCACTCAGTGAAGGCTCTGAATCCACATCAGAATCAAAAATTGTCTAGCATGGTTAAACAGGAATGTGACTGGAAACTGTCATGTGAGGGCATGCCTATGGTTTTCAATTCCACAAATGGAAACATGTTCATGACACCACTGCATGGGATTTCTTCATATGGATCTAAACCACAGGAGCAGTATTTGCTCAGAAGTACTCTCCATGGATGTCAATTTGGACCTTATGATACTATTATGCAAATGCAATCAATGCAACATCAGTGA | 921 | 0.4278 | MNRGIEVLSPASYLQNSNWLFQESKGTKWTPEENKRFESALALFDKDTPDRWVKVAAMVPGKTVGDVIKQYRELEEDVSVIESGLIPIPGYTTGSFTLEWVNDQDFDEFNQFYSVCGKRGTSTRPCEQERKKGVPWTKEEHRQFLLGLKKYGKGDWRSISRNFVTTRTPTQVASHAQKYFIRQLTGGKDKRRSSIHDITVVNLPETKSGPDSNLPPSQDHSVKALNPHQNQKLSSMVKQECDWKLSCEGMPMVFNSTNGNMFMTPLHGISSYGSKPQEQYLLRSTLHGCQFGPYDTIMQMQSMQHQ. | 307 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca3g10562 | 306 | SUPERFAMILY | Homeodomain-like | 27 | 83 | IPR009057 | - | |
| Seca3g10562 | 306 | FunFam | transcription factor MYB1R1 | 134 | 185 | - | - | |
| Seca3g10562 | 306 | SMART | sant | 132 | 182 | IPR001005 | - | |
| Seca3g10562 | 306 | SMART | sant | 25 | 77 | IPR001005 | - | |
| Seca3g10562 | 306 | Gene3D | - | 21 | 88 | - | - | |
| Seca3g10562 | 306 | FunFam | Transcription factor SRM1 | 21 | 88 | - | - | |
| Seca3g10562 | 306 | CDD | SANT | 135 | 180 | IPR001005 | - | |
| Seca3g10562 | 306 | CDD | SANT | 28 | 74 | IPR001005 | - | |
| Seca3g10562 | 306 | PANTHER | DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED | 23 | 246 | IPR043363 | - | |
| Seca3g10562 | 306 | Pfam | Myb-like DNA-binding domain | 135 | 180 | IPR001005 | - | |
| Seca3g10562 | 306 | Pfam | Myb-like DNA-binding domain | 28 | 73 | IPR001005 | - | |
| Seca3g10562 | 306 | Gene3D | - | 134 | 184 | - | - | |
| Seca3g10562 | 306 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 131 | 183 | IPR006447 | GO:0003677 | |
| Seca3g10562 | 306 | ProSiteProfiles | SANT domain profile. | 136 | 184 | IPR017884 | - | |
| Seca3g10562 | 306 | ProSiteProfiles | SANT domain profile. | 24 | 79 | IPR017884 | - | |
| Seca3g10562 | 306 | SUPERFAMILY | Homeodomain-like | 129 | 183 | IPR009057 | - | |
| Seca3g10562 | 306 | ProSiteProfiles | Myb-like domain profile. | 128 | 180 | IPR001005 | - | |
| Seca3g10562 | 306 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 128 | 184 | IPR017930 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca3g10562 | Seca-Chr3 | 251129037 | 251130313 | Dispersed/Wgd |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | MYB | Seca3g10562 | Myb_DNA-binding | 3.4e-12 | CL0123 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca3g10562 | - | - | gmx:778077 | 494.197 |