Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10557 ATGTCTTCCATCAGTTCCTCTCCCAGAAACAAGGATCATGAGTCTGAATCCACATCTAGTAATGATCCCAATCCAAAGTCGATGATCTACGATGTGTTTTTGACTAATTTCTGTGTCAAAGAAGATACTTGTAAATCTTTTGCTTCCCATCTCTACTCTGCTCTCACTGAGGCTGGAGTTCATGCTTTCTGGGACAATGGCAAGCTTAGAAGTGATGAAGATCAGATAACACCCTCAGTGCTGCATGCAGTCAGAGGGTCTCGAATGTCCATCATCGTTTTCTCAAGGAATTATGGTGATGAGTCAAGATGGTGTCTGCAAGTGTTGGAGAAAATAATGGAGTGTCGCAGAACCATAGATCAGATGGTTGTGCTTGTGTTCTATGAAGTAGATCCCTCCGATGTATACAAGCAGATATGTGGAGAAGAAGCTTTCAATTTTAAAGAAAGAATCTTGTTGGGGGAGGAAGACGAGTTGACGAGTTGGAAGGCAGAGCTCCTTGAAGATAGCAACATTTCAGAATTTGTCCTCACGGATTCCAGGAACCAAAATAAAGATATGAAGGATATAGTTAAGCATGTTACACATTTTCTAGGCAAGATAGACTTGTTTATTGCTGAACATCCAGTGGGATTAGAATATCGGGTTCAAGGTGTGACTCAACTGTTGGACATCCACAAACAATCGAAACGTCCTCTAATACTTGGGATTTGGGGGACAGGAGGGGTTGGTAAAACAACCATTGCCAAAGCCATTTATAATCAAATTGGTCGCAATTTTGAGGCTAAAAGCATCCTATTAAATGTTCGCAACATTTGGGAACAAAATAATGGCCCGATTTCTTTACAAGAACGACTTATTTCAGATATCTGCAAAACAACAAAAATAAAGATTGAGACAATTGAAGTAGGAAAAAGTATATTGATGAAAAGACTTCGCAAAAAAAGGATATTTCTTGTGCTTGATGGTGTCTATAACTTGGACCAATTCAATGCTTTGTGTGTAAGCCGTGAATGGATTGGTGAAGGGAGTATAATAATCACAACAACAAGAGATAAAAAATTGCTTATGGATTGTAGAGTTGATTGTGTGTATGAGATGAAAATATTTAATTTTGATGAATCTGTTGAGCTTCTTTGTTGGCATGCATTCAAGCAAGCAAGTCCTAGAGAGGATTTTGTTAAACGTTCTGAGGAAATAGTTTCTTATGTTGTGGGATTGCCACTAGTTCTTGAAGTCCTTGGGTCCCATTTGTTTGGAAGGGTAGAGTGGAGGAGTATGTTGCACAAACTCAAAAGAAATCCCCATAGGGATTTAATACAAATTCTAAAAGTATGTTTGGATGAGTTAAATGATGAAGAGAAAATATTATTCCTTGATTTAGCACAATTCTTCATTGGGATGGATCGAGACCATGCAATACATGTATTAAATAGCTCATCAGCACAATTAAGCGTCTTGATGGTGCTTGCAAGAATTGGAGAACATAATGGAAAGTCGCAGAACCATGGGTCTAATGGTTGTGCCAGTGTTCTATGGTGTAGATCCCTCAGATGTACGACAACAGACAGGAATGAAAGTGATGATATCAAGAAAGTTGTTGAACAAGTTACTGGATTGCTAGACAGGACAGACTTGTTTGTTGCTGAGCATCCAGTAGGGGTAGAAGATCGTGTGGAACGTGTTGTTCAATTAATGGGTAAAAATCAATTACTAGGGGTATCAGGGATGGGAGGACTTGGTAAATCAACCATTGCCAAAGCTGTTTACAATCGAGTTCGTCACAACTTTGAGGCTAAGTGCTTCCTCCTAAATATCAGGGAAGCTTGTGAACAAAACAATGGCAATATTGTTTCTTTACAACAAAAGCTTCTTTCTGATATCTACAAAACAACAAAGATAAATATAGATACAGTTGAATCAGGAAAAACAGAATTGAGGAAAAGACTTAGCCAAAAGAAGATATTTCTTGTGCTTGATGATGTGAATGAAGAAGAACAATTGGATGCTTTGTGTGGAAGTCGCACATGGTTTAGCCATGAAAGTAGGATAATCATCACAACAAGAGATGATGATTTACTTAGCAAGCTTAAAGTTGACTATATATATAAAATGAAGGAAATGAAGAAAAATGAATCTCTTGAGCTTTTTAGTTGGCATGCATTCAAGCAACCAAGTCCAAGAGAAGGTTTTGCTGACCTTTCTAGAGATGTGGTTGAATATTGTGAAGGGTTGCCACTAGCTCTTCAAGTCATTGGGTCTTTTTTGAGAACAAGGGGAGAAAAAGTGTGGAAGAGTGTATTGGAAAAACTCAAAATTATTCCCCATAAAAAAGTGCAGAAGAAGCTCAGAATAAATTTTGATGGTTTAGGTGATGATAAAGTGCAAGAAATATTCCTTGACATAGCTTTTTTCTTTATTGGGATGGACAGAGATGAGGTAATTGAGATATTAAATGAGTGTGGACATTTTGCAGAAATTGGAATAGATATTCTTGTACAACAAAGCCTTGTAACTGTTGACAATAAGAACAAGCTTGGTATGCATAGTTTGCTACGAGACATGGGAAGAGAAATCGTTCGTGAGAAATCACCAGAGGAGGTCGAGAAGCGCAACAGATTATGGTTTTATGAGGATACACTTAAAGTGTTATCAAAAAACACTAGAATGACAGATGTTCATGGACTGAGTTTGAAGTCACAAAGTGTGAATACAACAACTTATTATTTGGAAACCAAAGCATTTGAGAAAATGGATAAACTTAGATTGCTTCAACTTGCTGGTGTACAACTTGATGGAAATTATAAATATCTTTCAACAGAACTTAGATGGCTCTGCTGGCATGGATTTCCTTTAAAATATACACCTGCAAACTTTTATCAAGAAAGTTTAGTTGCCATTGATTTAAAATACTCCAATTTGGAACGGGTTTGGAAGAGGTCCCAGTTGCTGAAGAAGTTGAAATTTCTCAATCTTAGTCATTCTCCTAAATTGACACAAACCCCAAACTTCTCGAACTTACCAAATCTTAAAAAGTTAATACTCAAAGATTGTACTAGTTTGTCTTCGATTTCTCATACTATTGGAAACCTCAATGAACTGCTTCTAATAAATTTGAAGAACTGTACAAGTCTTCGTGAACTTCCAAGAAGCATCTATAAGTTGAAGTCATTAAAAACTCTGATTTTGTCCGGATGTTCAAAAATTGACAAGTTGGAAGAAGACATAGAACAAATGGAATCTTTAACCACTCTGGTTGCTGATAACACTGCTATAACAAGAGTTCCCTTTGCTATAGTAAGATCAAAAAGTGTTGGCTATATTTCTTTGTGTGGCTATGAAGGATTCTCACGTAATGTGTTTCCTTCAATTATACGGTCTTGGGTGTCTCCAACTAATAATATCTTATCTCGAGTTCAAACATCTTCTGTGGGCATGTCATCTCTTGATCTCTTAGATGAACAAAATAGCACTTTCTATGGTGTATCACTGAAAGATCTTCAGAAGCTTCAACGCCTTTGGGTGAAGTGTGAATCAGAAGTTCAGCTAAATCAAAATGTAGAGAGAATTTTGGATTCCTTAGATACCACGAATTCTGAGGATTTGAAAGTAGTGCCAAGCACACCACAGGTCTCAAATTCCTTGACATCTCTTTTACTACAAATGGGAATGAACTGTCATGTCACTAAGATTCTTAGAGAAAACATTTTACAGAAAATGCCTCCCCTGGGATCTGGTTTACTCCCCTGTGACAAGTATCCTGATTGGTTAACCTTCAATAGTGAAGGTTCTTGTGTAACTTTCAAAGTCCCTCAAGTTGATGGGCGTAACTTGAAGACAATTATGTGCGTTGTCTATTTTTCTTCCCCTGACAATATCACATCAGAAGGCCTTCAAAATGTGTTGATGATAAATTGCACAAAGAACACCATTCAGCTCTATAAGAGAGATGCATTAGCCTCTTTTGACGAAGAGGAATGGCAGAGAGTTGTTTCAAATATAGAACCCGGTAACGAAGTGAAGGTTGTTGTTGTTTCTGGGAACGGATTCATTGTAAAGAAGACAACAATTTATCTTATATATGATGAAGATAAACCAATTGATGAAATGAATGAGCAACACTGCCATGAGTCAGATAAGAATGTGATCGTTTCTGGTGGAGATGAAAATAGATTTGGTAGATTCTTCTTTGTACTTCCTCCCCTTGTTCGAGCCGTTCTGATCTCACGGCCTTTCTGGTTCGGTCTGGTTGGCGTTCTATTTTGGTTTTGTTGCCGTTCTGACAAGAGAAGAAGCTGTAACCTCATTTTAAGGCAGGCCATGCGTACACGCCAAATGAATGAAAGTGGAAATCCGAGCGATGATATTGAGAAAGTAGTTGGACGTGTTACTCATTTTCTAGACAAGACAGAATTGGACGTTGCTGAGCATCCAGTGGGGATAAAATGTCATGTGCAAGATGTGACTGAGCTATTGAACAACCAACAATCAAGGGATCCTCTCCTACTAGGGATATGGGGCATGGGAGGGATTGATAAAACAACCATTGCCAAAGCTGTTTATAATCAAATTTGTCATGATTTTGAGGCTAAGAGCTTCCTCTGGCATGTGAGGGAAGTTTGCAAAGAACACAATGGTAGAGTCATTTTACAACAAAAGCTTCTTTCTGATATCTATAAAACAACCAAGATAAAGATAGATACAGTTGATTCAGGAATAAAGATTTTAAAGGAAAAACTTAAACCAAAAAGGTTATTTTTGGTGCTTGATGATGTCAATAAATTGGAGCAGATGAAAGCTTTATGTGGAAGTCGTGAATGGTTTGGCCAAGGAAGCAGAATAATCATCACAACAAGAAATGAAGATATACTTTGTAAGCTTCGAGTTGATTATGTATATAGAATAAAAGAAATGGACGACGGTGAATCTCTTCAACTTTTTAGTTGGCATGCATTCAAGCAACCAAGTCCTAGTGAAGGTTTTGATGAACTTTCTAGAGAGGTAGTCAAGTACCCTGGGGGATTGCCACTTGCTCTTCAAGTCATTGGGTCCTTTTTGTTGGCCACGAGGAGTAAAAGAGAGTGGAATAGTGTATTGGAGAAACTCAAAATAATTCCCAATGATGAAGTAATGGAGAAGCTCAAAATAAGTTTTGATGGTTTAAGTGATGATGATGTCAAAGAAATATTTCTCCACATAGCTTTTTTCTTTATTGGGATGTACCGAGATGAGGTGATTGAGATATTAAATGACTACATGGCAAGAGCAATTGTCCGTAAAATATCAATTGAGGAGCGCAAGGAGCCCAGTAGGATATGGCGACGTGAGGATGTGGGCGATGTACTATCAAAAGCTACGTTGATGGAGAAGCTGAAAATTCTGAATCTTAGTCATTCTCGTAAGTTGAGACAAACACCTGACTTTTCAAACTTACCAAATCTTGAAAAGTTAATACTCAAAGATTGTCCAAGTTTATCTCAAGTTTCTCCTACCATAGGACAACTCAAGAAAATTCTTCTGATAAATTTGAAAGATTGTACAGGCCTTCATGATCTTCCTAGAAGCATCTATAAGTTAGAGTCATTAAAAACTCTCATATTGTCTGGATGTACAAAAATTGACAAGTTGGAAGAGGACATAGAACAGATGAAATCTTTGACCACTCTGATTGCGGATAAGACTGCTATAACAAGAGTGCCCTTTGGAGTAGTAAGATCAAAAAGCATTGGATACATATCTTTGTGTGGCTTTGAAGGATTCTCACTTAATGTGATTCCTTCTATTATATGGTCTTGGATGTCTCCAAAAAGTAATATCTTATCCCTAGTTCAGACATATGCTATGGGTGTGTCATCTCTTGATTTCTTAGATGAACAAAATAGCATTTTTTATGGTCTATCATCTATTCTCAAAGAGCTTCAGAATGTCCAACGTCTTTGGCTCAAGTGCAACTCATCAGAAGCTCAACTTCATATTGTAAAAAGTATTTTGCAAGCAATGCCAGGCACATCACAAGTCTCAAATGTCAACACTTTAGCCTCCATTGATTGTCGCAGTCAAGTTAGCATTTCAGGCTCAAAAAATTCATGGACATCGCTTTTAATACAACTGGGAATGAACTGCCATGTCACCGATATTCTTAGAGCAAACATTTTACAGAGTGCATATTGGCTAACCTTGATGGGTGATGGCTCTTCTGTAACTTTCAAAGTCCCTCAAGTGGATGGACATAACTTGAAGACAATCATGTGTGTCGTCTATTCTTCTTCCCTGGACAATGTAACATCAGAAGACCTTAAAATTGTGTTAGTGATAAATTGCACAAAGAACACCATTCAACTCTATAAAAAGGCCGCATTAGCCTCATTAAAAGACAAGGAGTGGCAGAGAGTAGTATCACACATAGAACCTGATAATGAAGTTGAGATTGTTGTTGTTTTTGGGAACAAATTCGTTGTGAAGAAGACAACAATATATCTTATATATGATGAAGTAATTCAAGAAAATACGGAGCACTCCCATGAGCTAGACAAGGGCGTTTGTCCCTCTGATGGCGATGAAAATAAAGGAGATCCCAAGAAGAAGGGGAAAGATGTTAAGGGACTGACTTTGAAGATGAACACAACAACTTCTTTGGAAACCAAAGCATTTGAGAAGATGGATAAACTTGAATTGCTTCAACTTGCTGGCGTACAACTTAAAGGACATTTCAAGAATCTTAGATGGCTTTGCAGGCATGGATTTCCTTTAAAATATACACCTGAAGATTTCCATCAAGGAAGTTTGGTTGCGGTTGATTTAAAATATTCCAATCTGGAACTACTAATGTGGAAGAAATCTCAGTTGTTGAAGAAGCTGAAAATTCTCAATCTTAGTCATTCTCATAACTTGAGACAAACCCCAAACTTTTCCAACTTGCCAAATCTTGAAAAGTTAGTTCTCAAAGATTGTCGAAATTTATCACTGGTTTCTCCTACCATAGAACAACTTAAGAATATTCTTTTGATAAATTTGAAAGATTGTACGGGCCTTCGTGAACTTCCAAGGAACATCTATAAGTTAGAGTCATTGAAAACTCTGATCTTGTCTGGATGCACAAAAATTGACAAGTTGGAAGAGGACATAGGGCAGATGAAATCTTTGACCACTCTGGTTGCAGATAAGACGGCTATAACAGCAGTGCCCTTTGCAGTAGTAAGATAA 7203 0.3754 MSSISSSPRNKDHESESTSSNDPNPKSMIYDVFLTNFCVKEDTCKSFASHLYSALTEAGVHAFWDNGKLRSDEDQITPSVLHAVRGSRMSIIVFSRNYGDESRWCLQVLEKIMECRRTIDQMVVLVFYEVDPSDVYKQICGEEAFNFKERILLGEEDELTSWKAELLEDSNISEFVLTDSRNQNKDMKDIVKHVTHFLGKIDLFIAEHPVGLEYRVQGVTQLLDIHKQSKRPLILGIWGTGGVGKTTIAKAIYNQIGRNFEAKSILLNVRNIWEQNNGPISLQERLISDICKTTKIKIETIEVGKSILMKRLRKKRIFLVLDGVYNLDQFNALCVSREWIGEGSIIITTTRDKKLLMDCRVDCVYEMKIFNFDESVELLCWHAFKQASPREDFVKRSEEIVSYVVGLPLVLEVLGSHLFGRVEWRSMLHKLKRNPHRDLIQILKVCLDELNDEEKILFLDLAQFFIGMDRDHAIHVLNSSSAQLSVLMVLARIGEHNGKSQNHGSNGCASVLWCRSLRCTTTDRNESDDIKKVVEQVTGLLDRTDLFVAEHPVGVEDRVERVVQLMGKNQLLGVSGMGGLGKSTIAKAVYNRVRHNFEAKCFLLNIREACEQNNGNIVSLQQKLLSDIYKTTKINIDTVESGKTELRKRLSQKKIFLVLDDVNEEEQLDALCGSRTWFSHESRIIITTRDDDLLSKLKVDYIYKMKEMKKNESLELFSWHAFKQPSPREGFADLSRDVVEYCEGLPLALQVIGSFLRTRGEKVWKSVLEKLKIIPHKKVQKKLRINFDGLGDDKVQEIFLDIAFFFIGMDRDEVIEILNECGHFAEIGIDILVQQSLVTVDNKNKLGMHSLLRDMGREIVREKSPEEVEKRNRLWFYEDTLKVLSKNTRMTDVHGLSLKSQSVNTTTYYLETKAFEKMDKLRLLQLAGVQLDGNYKYLSTELRWLCWHGFPLKYTPANFYQESLVAIDLKYSNLERVWKRSQLLKKLKFLNLSHSPKLTQTPNFSNLPNLKKLILKDCTSLSSISHTIGNLNELLLINLKNCTSLRELPRSIYKLKSLKTLILSGCSKIDKLEEDIEQMESLTTLVADNTAITRVPFAIVRSKSVGYISLCGYEGFSRNVFPSIIRSWVSPTNNILSRVQTSSVGMSSLDLLDEQNSTFYGVSLKDLQKLQRLWVKCESEVQLNQNVERILDSLDTTNSEDLKVVPSTPQVSNSLTSLLLQMGMNCHVTKILRENILQKMPPLGSGLLPCDKYPDWLTFNSEGSCVTFKVPQVDGRNLKTIMCVVYFSSPDNITSEGLQNVLMINCTKNTIQLYKRDALASFDEEEWQRVVSNIEPGNEVKVVVVSGNGFIVKKTTIYLIYDEDKPIDEMNEQHCHESDKNVIVSGGDENRFGRFFFVLPPLVRAVLISRPFWFGLVGVLFWFCCRSDKRRSCNLILRQAMRTRQMNESGNPSDDIEKVVGRVTHFLDKTELDVAEHPVGIKCHVQDVTELLNNQQSRDPLLLGIWGMGGIDKTTIAKAVYNQICHDFEAKSFLWHVREVCKEHNGRVILQQKLLSDIYKTTKIKIDTVDSGIKILKEKLKPKRLFLVLDDVNKLEQMKALCGSREWFGQGSRIIITTRNEDILCKLRVDYVYRIKEMDDGESLQLFSWHAFKQPSPSEGFDELSREVVKYPGGLPLALQVIGSFLLATRSKREWNSVLEKLKIIPNDEVMEKLKISFDGLSDDDVKEIFLHIAFFFIGMYRDEVIEILNDYMARAIVRKISIEERKEPSRIWRREDVGDVLSKATLMEKLKILNLSHSRKLRQTPDFSNLPNLEKLILKDCPSLSQVSPTIGQLKKILLINLKDCTGLHDLPRSIYKLESLKTLILSGCTKIDKLEEDIEQMKSLTTLIADKTAITRVPFGVVRSKSIGYISLCGFEGFSLNVIPSIIWSWMSPKSNILSLVQTYAMGVSSLDFLDEQNSIFYGLSSILKELQNVQRLWLKCNSSEAQLHIVKSILQAMPGTSQVSNVNTLASIDCRSQVSISGSKNSWTSLLIQLGMNCHVTDILRANILQSAYWLTLMGDGSSVTFKVPQVDGHNLKTIMCVVYSSSLDNVTSEDLKIVLVINCTKNTIQLYKKAALASLKDKEWQRVVSHIEPDNEVEIVVVFGNKFVVKKTTIYLIYDEVIQENTEHSHELDKGVCPSDGDENKGDPKKKGKDVKGLTLKMNTTTSLETKAFEKMDKLELLQLAGVQLKGHFKNLRWLCRHGFPLKYTPEDFHQGSLVAVDLKYSNLELLMWKKSQLLKKLKILNLSHSHNLRQTPNFSNLPNLEKLVLKDCRNLSLVSPTIEQLKNILLINLKDCTGLRELPRNIYKLESLKTLILSGCTKIDKLEEDIGQMKSLTTLVADKTAITAVPFAVVR. 2401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10557 2400 Pfam TIR domain 30 194 IPR000157 GO:0007165
Seca3g10557 2400 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 203 461 IPR027417 -
Seca3g10557 2400 Gene3D Ribonuclease Inhibitor 2184 2399 IPR032675 -
Seca3g10557 2400 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1466 1733 IPR027417 -
Seca3g10557 2400 MobiDBLite consensus disorder prediction 1 24 - -
Seca3g10557 2400 Gene3D - 205 364 IPR027417 -
Seca3g10557 2400 Gene3D - 370 456 IPR042197 -
Seca3g10557 2400 Gene3D - 1638 1722 IPR042197 -
Seca3g10557 2400 Gene3D - 707 791 IPR042197 -
Seca3g10557 2400 Gene3D Ribonuclease Inhibitor 1774 2044 IPR032675 -
Seca3g10557 2400 PRINTS Disease resistance protein signature 571 586 - -
Seca3g10557 2400 PRINTS Disease resistance protein signature 1053 1069 - -
Seca3g10557 2400 PRINTS Disease resistance protein signature 742 756 - -
Seca3g10557 2400 PRINTS Disease resistance protein signature 649 663 - -
Seca3g10557 2400 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 545 802 IPR027417 -
Seca3g10557 2400 SMART till_3 29 172 IPR000157 GO:0007165
Seca3g10557 2400 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 2126 2374 IPR044974 GO:0006952
Seca3g10557 2400 MobiDBLite consensus disorder prediction 2173 2199 - -
Seca3g10557 2400 Gene3D - 1462 1632 IPR027417 -
Seca3g10557 2400 SMART AAA_5 568 709 IPR003593 GO:0016887
Seca3g10557 2400 SMART AAA_5 231 371 IPR003593 GO:0016887
Seca3g10557 2400 SUPERFAMILY Toll/Interleukin receptor TIR domain 20 163 IPR035897 -
Seca3g10557 2400 ProSiteProfiles TIR domain profile. 28 194 IPR000157 GO:0007165
Seca3g10557 2400 SUPERFAMILY L domain-like 848 1174 - -
Seca3g10557 2400 Gene3D Ribonuclease Inhibitor 872 1333 IPR032675 -
Seca3g10557 2400 Gene3D - 24 204 IPR035897 -
Seca3g10557 2400 Pfam NB-ARC domain 1484 1703 IPR002182 GO:0043531
Seca3g10557 2400 Pfam NB-ARC domain 557 777 IPR002182 GO:0043531
Seca3g10557 2400 Pfam NB-ARC domain 213 435 IPR002182 GO:0043531
Seca3g10557 2400 SUPERFAMILY L domain-like 1787 2368 - -
Seca3g10557 2400 Gene3D - 542 701 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10557 Seca-Chr3 251047183 251073988 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10557 21 479 WRKY Transcription Factor Family AT4G12020 27.056 5.34e-34 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10557 - - lja:Lj0g3v0297389.2 1241.48