Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10556 ATGTCTTCTTCTAGTTGGGGTGATCGTGATTTGCATTCTACTAATTCGCTGCCGGGTCCGGAGTCAGATTCTAATGATTTTTGGACTATGAGTTTTGATACTAATGGTGTTTGGAATTTGGACCAACTCGAGAAGAAGATTCCCAGTATGGAGATCGATTGGGCGAGTCCCATCGGAAGTGATTTAACTTTTGACAGAAGGACCTACGACGTGTTCTTGAGTTTTAGAGGGGAAGACACTCGTGCTTCCTTCACTTCACATCTCTATGCCGCTCTTCAAAATGCTGGAATCACTGTTTTCAGGGACGATGATTCACTTGGAAGGGGAGATGATATTTCATCCTCACTACCGGGAGCGATCGGAGAGTCTCAAATTTCTGTTATTGTTTTCTCCAAAAATTATGCGAATTCACGTTGGTGTCTGCGAGAGTTGGAGAAAATAATGAGCTGTCACAGAACCACAGGCCAGGTGGTTCTGCCGGTGTTCTATGATGTAGATCCCTCGGAAGTACGTCATCAAACAGGAGAGTTTGGAAAAGCATTTCAAGATCTTATAAACAGAACTACAATGGACGAAGACAGGATGCTGAGTTCGATGACGCCGCTGACACGGGAGAGAGTGGAGAATTGGAAGATGGCGCTTCGCGAAGCTGGTGGCATTGCAGGGTTTGTAGTCCTAAATTCCAGGAATGAAAATGAGGCTATCAAGAATATTGTTGAAAATATTACACGTTTGCTTGACAAGACAGACTTGTTTATTGCTGATAACCCGGTGGGAGTTGAATCTCGAGTGGGAGACATGATTCAACTGCTAGACAACAAACAAGCAAACAATGTTCTACTACTAGGGATGTGGGGCATGGGAGGAATCGGTAAAACAACTATTGCAAAGGCCATTTACAACAAAATTGGCCGCAATTTTGAGGGTAGGAGCTTCCTTGCAAATATTAGGGAAGTGTGGGAGCAAGATGCTGGACAAGTGTATTTACAAGAACAACTTCTGTTTGATATCCTCAAGAAAATGACAACCAAGATACATAGCATTGAATCTGGAAAAAATATATTAAAGGAAAGACTCTGCCATAAAAGAGTACTTATTGTACTTGATGATGTGAATAAATTGGACCAACTGAATGCCTTGTGTGGAAGTCGTGAATGGTTTGGTTCAGGGAGTAGAATAATCATCACAACCAGAGATAAGCATATGCTCAGAGGGAATAGAGTTGACCAATTATACATAATGAAAGAAATGGATGAAAGTGAATCTATTGAGCTTTTTAGTTGGCATGCATTCAAGCAAGCGAGTCCAAGAGGAGATTTTTTTGGAATTTCTAGAAATGTAGTTGAGTATTCTGGGGGACTGCCGCTAGCTCTTGAAGTCCTTGGATCCTATTTGTTTGATAGGGGGATAACAGAGTGGGAGTGTGTATTGGAGAAACTGAAAAGAATTCCCAATGATCAAGTACAGAAGAAGTTAAAAATAAGCTATGATGGTTTAGATGATGATACGGAGAAAGAAATATTCCTTGACATAGCTTGTTTCTTTATTGGGATGGACCGAAATGATGTTATACATATATTAAATGGCTGTGGACTTTTTGCAGAAATTGGAATAAGTGTCCTTGTTGAGCGAAGCCTTGTAACTGTTGATGATAAGAACAAGCTTGGAATGCATGACTTGCTGCGAGACATGGGAAGAGAAATCATTCGTGAGAAATCGCCAAAGAAGCTCCAAAAGCGTAGTAGGTTATGGTTTCAGGAGGATGTGCTTGACGTACTATCAGAGAAAACAGGAACAGATGCTATTGAGGGACTGGCTTTGAAGTTGCCAAGAACTGATAAACAACCTTTGAGTACTAAAGCATTTAAGAACATGAAGACACTCAGATTGCTTCAACTTGCTGGTGTACAACTTGATGGAGATTTTAAATATCTTTCAAGAAATCTCAGATGGCTGTGTTGGAATGGATTTCCTTTAACATGCATACCTACAGACTTTTGTCAAGGAAGTTTAGTTTCCATTGAGTTAGAAAACAGCAATATCAAACTTGTGTGGGAAAAGTCACAGAGGTTGAAGAAGTTAAAAATTCTCAATCTTAGCCATTCTCATCACTTGACACAGACCCCAGACTTTTCAAACTTGCCTAATCTTGAAAAGCTAGTACTCACAGATTGTCGAAGCCTATCTGAAGTTTCCCATACTATTGGACATCTAAAAAAAGTTCTTCTAATAAATTTGAAAGGCTGTGTTAGCCTTCGTAGCCTTCCAAGAAGCATCTATAAGTTGAAGTCTCTGAAAACTCTCATTCTTTCTGGATGTTTAATGATTGACAAGTTGGAAGAGGACTTGGAGCAGATGGAATCTTTGACAACCCTGATTGCAGATAACACTGCAATAACAAGAGTGCCCTTTTCATTAGTAAGGTCAAAAAGCATTGGTTATATTTCTTTGTGCGGCTATGAAGGATTCTCACGTGATGTGTTTCCTTCTATCATTTGGTCCTGGATGTCACCAACAAATAATCCATTATCCCTAGTTCAAAACACTGCAGGCATGTCATCTGTTGTTTCTTTAGATGTATCAAATAGTAGTTCTCAAGAACTACCATCTATTTCCAAGGACCTTCCAAAGCTTCTAAGTCTTTGGGTGGAGTGCGGCTCTGAACTTCAGCTTTCTCGTGATGCAGTTATAATTTTGGATGCCTTATATGCCACAAATTCTAACGAACTGGAATCAACTGCAACTACATCACAAGCATCAAATATTGAAACTTCTGGTTTAATTGAATGCAGCAGTCGAGTGCACATTTCAGGACCAAAAAATTCCTTGAAATCTCTTTTAATTCAAATGGGAATGAATTGCCAAGTCTCCAACATTCTGAAAGAGAGCATTTTACAGAGCATGACTATCAGTGGGTGTGAAGTTAGTTTGCTCCCAGGTGACAATTATCCAGATTGGTTAACCTTCAATTGTGAAGATTCTTCTGTAACTTTTGAAGTCCCTCAAGTAAATGGGCGTAACTTGAAGACATTGATGTGCATTGTCCATTATTCTACCCCAGATGACATAGCATCAGATGGCCTTAAAAATGTGTTGGTGATAAATCACACAAAGAGCATCATTCAGCTTTATAAGAGAGACACATTAGCCTCCTTTGAAAATGAGGAGTGGCAGAGAGTAGTATCAAATATAGAAGCTGGTAACAAAGTGCAGGTGGTGGTTGTTTTTGAGAATGGATTCATTGTGAAGAAGACAACAATTTATCTCATTTATGATGAACCAAGTGATGGGAAAATGGAACACTGCTATGCAGCAGATAAGAATGAAATTGTTTCTAGTGGTGATGAAATTGAATGTGCTGTCAGGAGGATCTCTCCTCAAGTGGAGTCCACTGATGACTTCAAACAAAAACAAAAAAGAAGAAAAATTGAGTAG 3435 0.3959 MSSSSWGDRDLHSTNSLPGPESDSNDFWTMSFDTNGVWNLDQLEKKIPSMEIDWASPIGSDLTFDRRTYDVFLSFRGEDTRASFTSHLYAALQNAGITVFRDDDSLGRGDDISSSLPGAIGESQISVIVFSKNYANSRWCLRELEKIMSCHRTTGQVVLPVFYDVDPSEVRHQTGEFGKAFQDLINRTTMDEDRMLSSMTPLTRERVENWKMALREAGGIAGFVVLNSRNENEAIKNIVENITRLLDKTDLFIADNPVGVESRVGDMIQLLDNKQANNVLLLGMWGMGGIGKTTIAKAIYNKIGRNFEGRSFLANIREVWEQDAGQVYLQEQLLFDILKKMTTKIHSIESGKNILKERLCHKRVLIVLDDVNKLDQLNALCGSREWFGSGSRIIITTRDKHMLRGNRVDQLYIMKEMDESESIELFSWHAFKQASPRGDFFGISRNVVEYSGGLPLALEVLGSYLFDRGITEWECVLEKLKRIPNDQVQKKLKISYDGLDDDTEKEIFLDIACFFIGMDRNDVIHILNGCGLFAEIGISVLVERSLVTVDDKNKLGMHDLLRDMGREIIREKSPKKLQKRSRLWFQEDVLDVLSEKTGTDAIEGLALKLPRTDKQPLSTKAFKNMKTLRLLQLAGVQLDGDFKYLSRNLRWLCWNGFPLTCIPTDFCQGSLVSIELENSNIKLVWEKSQRLKKLKILNLSHSHHLTQTPDFSNLPNLEKLVLTDCRSLSEVSHTIGHLKKVLLINLKGCVSLRSLPRSIYKLKSLKTLILSGCLMIDKLEEDLEQMESLTTLIADNTAITRVPFSLVRSKSIGYISLCGYEGFSRDVFPSIIWSWMSPTNNPLSLVQNTAGMSSVVSLDVSNSSSQELPSISKDLPKLLSLWVECGSELQLSRDAVIILDALYATNSNELESTATTSQASNIETSGLIECSSRVHISGPKNSLKSLLIQMGMNCQVSNILKESILQSMTISGCEVSLLPGDNYPDWLTFNCEDSSVTFEVPQVNGRNLKTLMCIVHYSTPDDIASDGLKNVLVINHTKSIIQLYKRDTLASFENEEWQRVVSNIEAGNKVQVVVVFENGFIVKKTTIYLIYDEPSDGKMEHCYAADKNEIVSSGDEIECAVRRISPQVESTDDFKQKQKRRKIE. 1145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10556 1144 Pfam TIR domain 69 244 IPR000157 GO:0007165
Seca3g10556 1144 Gene3D - 416 500 IPR042197 -
Seca3g10556 1144 Gene3D - 244 410 IPR027417 -
Seca3g10556 1144 Gene3D Ribonuclease Inhibitor 605 968 IPR032675 -
Seca3g10556 1144 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 69 793 IPR044974 GO:0006952
Seca3g10556 1144 SMART till_3 68 220 IPR000157 GO:0007165
Seca3g10556 1144 Coils Coil 776 796 - -
Seca3g10556 1144 MobiDBLite consensus disorder prediction 1 24 - -
Seca3g10556 1144 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 247 511 IPR027417 -
Seca3g10556 1144 ProSiteProfiles TIR domain profile. 67 246 IPR000157 GO:0007165
Seca3g10556 1144 SUPERFAMILY L domain-like 557 886 - -
Seca3g10556 1144 PRINTS Disease resistance protein signature 689 705 - -
Seca3g10556 1144 PRINTS Disease resistance protein signature 358 372 - -
Seca3g10556 1144 PRINTS Disease resistance protein signature 451 465 - -
Seca3g10556 1144 PRINTS Disease resistance protein signature 281 296 - -
Seca3g10556 1144 FunFam Disease resistance protein (TIR-NBS-LRR class) 65 248 - -
Seca3g10556 1144 Pfam NB-ARC domain 261 496 IPR002182 GO:0043531
Seca3g10556 1144 Gene3D - 66 243 IPR035897 -
Seca3g10556 1144 SMART AAA_5 278 418 IPR003593 GO:0016887
Seca3g10556 1144 SUPERFAMILY Toll/Interleukin receptor TIR domain 60 223 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10556 Seca-Chr3 251033555 251040012 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10556 67 806 WRKY Transcription Factor Family AT4G12020 30.830 3.23e-84 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10556 - - lja:Lj0g3v0331109.1 1605.11