Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10547 ATGATAGTTGCAATGGACTTGAATGCCTCACCGGTCCCAGAGGAAGATGAAGATACTTTTGAGGCGAATCTACATGTTGAAGAGTTTACTGCACCTGAAGAACGCATAGAAACTGGAGCTGATATAGCACGTCGGGAGCGTGAAGAAAGAAAGAGACGGTTGAAGAGAGAACGTTCAGATGACAGACCTGTGCATGTAACACAGTCGCCTGGATATGATCATCAATATCATAATAAGAACCTTAAATCATATGATAAAAGCAGGCTTCCTCCGGGGTGGTTGGATTGCCCTTCATTTGGCCAGGAAATTTGTTGCATGATACCTTCTAAGGTTCCACTTAGTGAATCTTTCAATGACTGCATTGCTCCTGGTAAAAGATACTCATTTAAACAAGTGATACATCAACAGAGAGTTTTAGGGAGAAAACTTGGTCTGGTGATTGATTTGACAAACACCTCTCGATACTATCCAGTTTTAGATTTAAAGAAAGACGGTATCAAGCATGTTAAGATTCAATGCAAGGGGCGGGATTCTGTACCTGATAATTTATCTGTGAACCAGTTCGTCTATGAGGTTATACAATTTTTGTCACGCCAAAAACACCCAAAGAAGTTTATACTTGTTCATTGTACACATGGACATAATCGTACAGGATACATGATTATCCATTATCTAATGCGTGCTATGTCAATGTCTGTTACTCAGGCAATTAAAATTTTTTCTGAAGCACGCCCTCCAGGAATCTACAAACCTGATTATATTGATGCATTGTATGCATTTTATCATGAGAAAAAGCCTGAAATGGTAGTTTGTCCTCCTACTCCAGAGTGGAAAAGATCTTCTGAATTTGATCTCAATGGTGAAGCAGTACCGGAGGAGGATGATGACGGAATACCAGGCCCTGATTTGCAGGAGAATCATGAGAATCATGAGACAGACACACGAATGACAAATGATGATGTTTTAGGAGATGAGATACCTGCTGATCAGCAAGATGCATTTCGACAGTTCTGTTATCAAACACTTAAATTGGGTGTTGGGGCCAGAGGACACACACAATTTCCAGGTTCACACCCAGTTTCTCTCAACAGGGATAATTTGCAGTTGTTACGACAACGTTATTATTATGCAACATGGAAGGCTGATGGTACACGATATATGATGCTAATAACAATGGATGGGTGTTACTTGATAGATCGAAATTTTAATTTTCGAAGGGTCCAAATGAGGTTTCCTTGCAGGGGTACAAACGATGGTTTGGGTGAGAAGACTCACCACTTCACATTACTTGATGGTGAGATGGTTATTGATACGTTGCCAGATTCACAGAAGCAGGAGAGAAGATACCTTATATATGATCTGATGGCAATCAACCAAGTATCAGTAATAGAGCGACCCTTCTACGAACGGTGGAAGATGCTTGAGAAAGAAGTGATTGAACCTAGGAATCAGGAACGACAAAGTATATACCAGAGCAGAAATCCTTACTATAGATATGACCTGGAACCATTCAGGGTGAGGAGGAAAGATTTTTGGTTGCTCTCTACTGTCTCAAAGCTTTTAAAGGAATTCATTAAGAGACTTTCGCATGAGGCAGATGGTCTCATATTTCAGGGTTGGGACGATCCTTACATACCACGTACTCATGAAGGACTCTTAAAGTGGAAATATGCTTATTTGAATTCAGTTGATTTTCTCTTTGAGGTTGATGGTGATCGTGAGTTACTTTTTCTCTATGAACGGGGAAAGAAGAAACTCATGGAAGGGAATAGGGTTTCATTCACAGATGGTTCAGATCCCTCACTTTATTCCGGAAAGATCATAGAGTGTTCCTGGGATTTTGATGAACAGGAATGGAAATTTTTGCGAATCAGGACAGATAAATCAACTCCAAATGAGTTTAATACTTACAAGAAGGTGATGCGAAGCATAAGAGACAACATCACAGAGGATGACTTGCTGAATGAGATAAATGAGATAATTCGCCTTCCCATGTATGCCGACAGGATAAGAATGGATAGTAAAGCAAATCAGCATGCTAATGTCGCAAGGCGAAGGTGA 2061 0.4027 MIVAMDLNASPVPEEDEDTFEANLHVEEFTAPEERIETGADIARREREERKRRLKRERSDDRPVHVTQSPGYDHQYHNKNLKSYDKSRLPPGWLDCPSFGQEICCMIPSKVPLSESFNDCIAPGKRYSFKQVIHQQRVLGRKLGLVIDLTNTSRYYPVLDLKKDGIKHVKIQCKGRDSVPDNLSVNQFVYEVIQFLSRQKHPKKFILVHCTHGHNRTGYMIIHYLMRAMSMSVTQAIKIFSEARPPGIYKPDYIDALYAFYHEKKPEMVVCPPTPEWKRSSEFDLNGEAVPEEDDDGIPGPDLQENHENHETDTRMTNDDVLGDEIPADQQDAFRQFCYQTLKLGVGARGHTQFPGSHPVSLNRDNLQLLRQRYYYATWKADGTRYMMLITMDGCYLIDRNFNFRRVQMRFPCRGTNDGLGEKTHHFTLLDGEMVIDTLPDSQKQERRYLIYDLMAINQVSVIERPFYERWKMLEKEVIEPRNQERQSIYQSRNPYYRYDLEPFRVRRKDFWLLSTVSKLLKEFIKRLSHEADGLIFQGWDDPYIPRTHEGLLKWKYAYLNSVDFLFEVDGDRELLFLYERGKKKLMEGNRVSFTDGSDPSLYSGKIIECSWDFDEQEWKFLRIRTDKSTPNEFNTYKKVMRSIRDNITEDDLLNEINEIIRLPMYADRIRMDSKANQHANVARRR. 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10547 686 PIRSF mRNA_capping_HCE 75 686 IPR017074 GO:0004484|GO:0006370|GO:0140818
Seca3g10547 686 Gene3D Protein tyrosine phosphatase superfamily 64 284 IPR029021 -
Seca3g10547 686 Pfam Dual specificity phosphatase, catalytic domain 141 261 IPR000340 GO:0008138|GO:0016311
Seca3g10547 686 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 320 557 - -
Seca3g10547 686 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 89 278 IPR029021 -
Seca3g10547 686 Gene3D - 594 663 IPR012340 -
Seca3g10547 686 Coils Coil 40 60 - -
Seca3g10547 686 MobiDBLite consensus disorder prediction 27 75 - -
Seca3g10547 686 FunFam mRNA capping enzyme, putative 317 554 - -
Seca3g10547 686 FunFam mRNA capping enzyme family protein 555 663 - -
Seca3g10547 686 Pfam mRNA capping enzyme, C-terminal domain 580 654 IPR013846 -
Seca3g10547 686 PANTHER MRNA-CAPPING ENZYME 84 668 - -
Seca3g10547 686 MobiDBLite consensus disorder prediction 27 64 - -
Seca3g10547 686 CDD Adenylation_mRNA_capping 346 557 IPR001339 GO:0004484|GO:0005524|GO:0006370
Seca3g10547 686 FunFam mRNA capping enzyme family protein 85 298 - -
Seca3g10547 686 MobiDBLite consensus disorder prediction 300 319 - -
Seca3g10547 686 CDD RNA_5'-triphosphatase 92 258 - -
Seca3g10547 686 Gene3D DNA ligase/mRNA capping enzyme 317 556 - -
Seca3g10547 686 ProSiteProfiles Dual specificity protein phosphatase domain profile. 111 267 IPR020422 GO:0006470|GO:0008138
Seca3g10547 686 MobiDBLite consensus disorder prediction 288 319 - -
Seca3g10547 686 Pfam mRNA capping enzyme, catalytic domain 358 556 IPR001339 GO:0004484|GO:0005524|GO:0006370
Seca3g10547 686 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 186 255 IPR000387 GO:0016311|GO:0016791
Seca3g10547 686 SUPERFAMILY Nucleic acid-binding proteins 560 671 IPR012340 -
Seca3g10547 686 ProSitePatterns Tyrosine specific protein phosphatases active site. 208 218 IPR016130 GO:0016311|GO:0016791
Seca3g10547 686 ProSiteProfiles ATP-dependent DNA ligase family profile. 440 584 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Seca3g10547 686 SMART dsp_5 123 263 IPR020422 GO:0006470|GO:0008138
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10547 Seca-Chr3 250913952 250932176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10547 1 686 Protein tyrosine phosphatase (PTP) family AT3G09100 68.215 0.0 948
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10547 K13917 - gmx:100776633 1287.71