Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10544 ATGGAGTTTTTCCTGCGCCGCAAACTAGATTTCAAGCCAGCAGAGCGCGATATACCAATGTCTTTCATCAATTCGGATGATGACGAGCTCAGAAGGAACGATGAGATGTCCGGCAGAAGGATTAATGAAGTGTTCTTGAGTTTTAGAGGGGAAGACACTCGTGCATCCTTCACTTCACACCTCTACGCCGCTCTTAAAAATGCCGGAATTACTGTTTTCAGGGACGATGTTTCGCTTCCAAGGGGAGATCATATTTCAACTTCTCTACTGCGAGCAATCGAAGAGTCTCAAATTTCTGTTATTGTTTTTTCAAGAAATTATGCGGGTTCGCGGTGGTGTCTGCAAGAGTTGGAGAAGATAATGGAGTGTCACAGAACCATAGGCCACGATGTTCTGCCGGTGTTTTATGATGTAGATCCCTCAGAAGTGCGCCATCAAATAGGTGAGTTTGGAAAAGTATTTGAAGAACTTGTGATCAAAATTTCCACAGAGGAACAGGAGGAGCTAAATAGGATGATGGGGCTTGCTGATTGGGAGAAATTTTACGATCGTGATATGTGGCTGACAGAGGAGATGGCGAAGAGGGTGCGGGAATGGAGAATGGCGCTTCGTGAGGCTGGTAGCATAGCAGGGTTTGTAGTCCTACATTCTAGCACGTCAACTACAGTGCTACACTGCAACGTGATAGCGCTTGACAGAGACAACGCCTGTGTCGTGATGGTGAAGAAGGGAAGCTACAGTCTCGGGATTGTTGTGACTCGGCTTCGCGTCACGGTTGCCACGGGTGCTGGCAGCGCGGAACTCCGGAATGAAAGTGAGGTTATCGAGAATGTTGTTGAAAATGTTACACATTTGCTTGACAAGACAGACTTGTTCATTGCTGATAATCCTGTGGGAGTCGAATCTCGAGTACAAAATATGATTCAACTGCTAGGCAACCAACAATCAAACGATGTTCTACTACTAGGGATATGGGGCATGGGAGGAATTGGTAAAACAACCATTGCGAAAGCCATTTACAATAGAATTGGTTGCAATTTTGAGGGCAGGAGCTTCCTTGCAAATATCAGGGAAGTTTGGGAGCAAGATGCTGGTCAAGTGTATTTACAAGAACGACTTCTGTTTGATATCTACAAAACAACAAAAACAAAGATACATAGCATTGAATCAGGAAAAAATATATTGAAGGAAAGGCTCTGCCATAAAAGAATACTTATTGTACTTGATGATGTGGATAAATTGGACCAACTGAATGCTTTATGTGGAAGTCGTAAATGGTTTGGTTCAGGGAGTAGAATAATCATCACAACGAGAGATAAGCATATACTTAGGGGGAATAGAGTTGACCAAGTATACATAATGGATGAAATGGATGAAAGTGAATCTATTGAGCTTTTTATTTGGCATGCATTCAAGCAAGCAAATCCTAGAGAAGATTTTGCTGGAATTTCCAGAAATGTAGTTGAGTATTGTGGGGGATTGCCGCTAGCTCTTGAAGTTCTTGGGTCCTATTTGTTTGATAGAGGAATAACTGAGTGGGAGAGTGTATTGGAGAAACTAAAAAGAATTCCCAATGATCAAGTACAGAAGAAGTTAAAAATAAGCTATGACGGTTTAAATGATGATACAGAGAAAGAAATATTCCTTGACATAGCTTGTTTCTTTATTGGGATGGACCGCAATGATGTTATACATATATTAAATGGCTGTGGACTTTTCGCAGAAATTGGAATAAATGTCCTTGTTGAGCGAAGCCTTGGAACAAAAGCTATTGAGGGTCTGGCTTTGAAGCTGCCAAGTACTAATACAAAATGCTTTAGTACTAAAGCATTTAAGAAGATGAAGAGACTCAGATTGCTTCAACTTGCTGGTGTACAGCTTGATGGAGATTTTGAATATCTCTCAAGAAATCTGAAATGGCTGTGTTGGCATGGATTTTCATTAGAATACATACCTACAAACTTTTATCAAGGAAATTTAGTTTCCGTTGAGTTAGAAAACAGCAATGTCAAACTTGTGTGGAAAGAGGCCCAGAGGATGGAGAAGCTGAAAATTCTCAATCTCAGTCATTCTCATCATTTGACACAGACCCCGGACTTCTCAAACATGCCTAATCTTGAAAAGCTAGTACTCACAGATTGTCCAAGCCTGTCTGAGGTTTCCTATAGCATTGGACATCTCAATGAAGTTCTTCTAATAAATTTGAAAGACTGCATAAGCCTTCGTAAACTTCCAAGAAGCATCTATAGTTTGAAATCTCTGAAAACCCTCATTCTTTCTGGATGTTTGATGATTGACAAGTTGGAAGAGGACTTCGAACAGATGGAATCTTTGACAACCCTGATCGCAGATAAGACTGCAATAACAAGAGTGCCCTTTTCAGTAGTGAGGTCAAAAAGCATTGGATATATTTCTCTGTGCGGCTATGAAGGATTCTCACGCGATGTGTTTCCTTCTATCATTAGGTCTTGGATGTCACCAACAAATAATCTATCATCCCTAGTTCAAACATCTGCTGGCATGTCATCTCTTGTTTCTTTGAATATACCAAATAGTGGGTCCCACGATCTATCATCTATTTCCAAGGACCTTCCAAAGCTTCGAAGTCTTTGGGTGGAGTGTGGTTCAGAACTTCAACTTTCTCGAGATGTAGCAAGAATTCTGGATGCCTTATATGCCACAAATTCTACGGAATTGAAATCAACTGCAACTACATCACAAGTATCAAATATGAAAACTTCTTCAATAATTGAGTGCTGCAGTCAAGTGCACATTTCAGGATCAAAGAATTCCTTGAAATCTCTTTTAATTCAAATGGGAATGAGCTACAAAGTCACCAATACTCTGAAAGAGAGCATTTTACAGAATATGACTATCAGTGGGTGTGATGTTACTTTGCTCCCCAGTGACAATTATCCAGATTGGTTAGCCTTCGATTGCGAAGGTTCTTCTGTAACTTTTGAAGTTCCTCGAGTGAATGGGCGTAGCTTGAAGACAATGATGTGCATTGTCCATTATTCTACCCCAGATGATATAACATCAGATGGCCTCAAAAATGTGTTGGTAATAAATTACACAAAGACCATCATTCAGCTCTATAAGAGAGACACATTAGCCTCCTTTGAAAATGATGAGTCGGAGAGAGTTGTATCAAATATAGAACCTGGTAACAAAGTGAAGGTGGCTGTTGTTTTTGAGAATGGAATCATTGTGAAGAAGACAACAATTTATCTCATTTATGAGGAAGCAATTAATGGGAAAATGGAACACTGCTATGCCGCAGATAAGAATGAAATTATTCCTAGTGGTGATGAAAATGAACACATTGTGAGCAGGATCTGTCCTCAAGTGGAGTCCACGGATGACTTCAAACAAAAGCAAAAAAGAAGAAAATCCGAATAA 3402 0.4027 MEFFLRRKLDFKPAERDIPMSFINSDDDELRRNDEMSGRRINEVFLSFRGEDTRASFTSHLYAALKNAGITVFRDDVSLPRGDHISTSLLRAIEESQISVIVFSRNYAGSRWCLQELEKIMECHRTIGHDVLPVFYDVDPSEVRHQIGEFGKVFEELVIKISTEEQEELNRMMGLADWEKFYDRDMWLTEEMAKRVREWRMALREAGSIAGFVVLHSSTSTTVLHCNVIALDRDNACVVMVKKGSYSLGIVVTRLRVTVATGAGSAELRNESEVIENVVENVTHLLDKTDLFIADNPVGVESRVQNMIQLLGNQQSNDVLLLGIWGMGGIGKTTIAKAIYNRIGCNFEGRSFLANIREVWEQDAGQVYLQERLLFDIYKTTKTKIHSIESGKNILKERLCHKRILIVLDDVDKLDQLNALCGSRKWFGSGSRIIITTRDKHILRGNRVDQVYIMDEMDESESIELFIWHAFKQANPREDFAGISRNVVEYCGGLPLALEVLGSYLFDRGITEWESVLEKLKRIPNDQVQKKLKISYDGLNDDTEKEIFLDIACFFIGMDRNDVIHILNGCGLFAEIGINVLVERSLGTKAIEGLALKLPSTNTKCFSTKAFKKMKRLRLLQLAGVQLDGDFEYLSRNLKWLCWHGFSLEYIPTNFYQGNLVSVELENSNVKLVWKEAQRMEKLKILNLSHSHHLTQTPDFSNMPNLEKLVLTDCPSLSEVSYSIGHLNEVLLINLKDCISLRKLPRSIYSLKSLKTLILSGCLMIDKLEEDFEQMESLTTLIADKTAITRVPFSVVRSKSIGYISLCGYEGFSRDVFPSIIRSWMSPTNNLSSLVQTSAGMSSLVSLNIPNSGSHDLSSISKDLPKLRSLWVECGSELQLSRDVARILDALYATNSTELKSTATTSQVSNMKTSSIIECCSQVHISGSKNSLKSLLIQMGMSYKVTNTLKESILQNMTISGCDVTLLPSDNYPDWLAFDCEGSSVTFEVPRVNGRSLKTMMCIVHYSTPDDITSDGLKNVLVINYTKTIIQLYKRDTLASFENDESERVVSNIEPGNKVKVAVVFENGIIVKKTTIYLIYEEAINGKMEHCYAADKNEIIPSGDENEHIVSRICPQVESTDDFKQKQKRRKSE. 1134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10544 1133 Gene3D Ribonuclease Inhibitor 593 976 IPR032675 -
Seca3g10544 1133 SUPERFAMILY Toll/Interleukin receptor TIR domain 33 168 IPR035897 -
Seca3g10544 1133 SMART AAA_5 318 458 IPR003593 GO:0016887
Seca3g10544 1133 SUPERFAMILY L domain-like 596 936 - -
Seca3g10544 1133 PRINTS Disease resistance protein signature 321 336 - -
Seca3g10544 1133 PRINTS Disease resistance protein signature 398 412 - -
Seca3g10544 1133 PRINTS Disease resistance protein signature 491 505 - -
Seca3g10544 1133 PRINTS Disease resistance protein signature 678 694 - -
Seca3g10544 1133 Pfam NB-ARC domain 301 536 IPR002182 GO:0043531
Seca3g10544 1133 Gene3D - 286 452 IPR027417 -
Seca3g10544 1133 Gene3D - 41 285 IPR035897 -
Seca3g10544 1133 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 285 551 IPR027417 -
Seca3g10544 1133 SMART till_3 41 209 IPR000157 GO:0007165
Seca3g10544 1133 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 43 903 IPR044974 GO:0006952
Seca3g10544 1133 Gene3D - 456 540 IPR042197 -
Seca3g10544 1133 ProSiteProfiles TIR domain profile. 40 200 IPR000157 GO:0007165
Seca3g10544 1133 Pfam TIR domain 44 163 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10544 Seca-Chr3 250875595 250884604 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10544 269 795 WRKY Transcription Factor Family AT4G12020 30.640 6.96e-58 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10544 - - lja:Lj0g3v0331109.1 1488.4