Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10525 ATGGGTATATTAACCGCTGTGTCTGCTGAAAAAGAGGTTGAAACGGATGGGAGGAAGACCAGGATGATGGAAATGGAGCTTGCTGATGACAAGGGGAGGATGAGGTGCACCGTTTTTGGGAATTATGTGGACACATTGAAGGAGTGTGTGGCCTCAGGTGTTGCTCCATTACCGGTGGTTGTGGCCCAACTTTTTAAAGTCAGGCTGTACAGGGGTACTGTTGTTTTACAAAATGTGAACAACACATCGAGGATCTTGTGGAATCCTGATATTCCAGAGGCAATTGATTTTAGGAATAGCTTGGCATGCCATGGAATTGACTTTGATGTTGAGATTGGTGTTATTGAGGGGGGAAATCGTGCTGTTCCGCTGTCTGATGAATTCCTTAGATTGTATCCAAGGAAATCTGTTAATGAATTGCAGATAACTGAGGAGGAAGGGATTTTCATAGTTGATGCCACCATTGTTTCGGTTATGAAGGACGAACAATGGTGGTATGGGGCTTGCAAGTGTCACAAGGCAGTTACACCAGATGGGGGACTTTACTACTGTTCTAATTGCTCAACTCATGTAGTTGAAGTTACCCCAAGATATAAGTTGAGGGTTGAAGTTTTCCGTTGGGACGACTCTGCTTCCTTTATTCTCTTCGATTCTGACTGTGTTTATCTGCTTGGGAAGACTTGCAAGGATCTGCTTGCAGAGTGCAGGGGTTTAAAGGCCGGTGAGCACCCACCCGATTTCAGGTGCCTCATTGGCAAGGATCTTCTCTTCAAGGTAGAGAAAACAGCTGAATATGCTTTCAGTTACGATGATTCCTTTAAAGTTAAAAAGGTGTGTGATGACAAGGAAATTATTCAACAATATAAGAAATCCTTTAGTGTTGAGACTCCTTTGAAGGTATTCATTGTAAACTTGGTTTTTAAAAACAATTGA 933 0.4266 MGILTAVSAEKEVETDGRKTRMMEMELADDKGRMRCTVFGNYVDTLKECVASGVAPLPVVVAQLFKVRLYRGTVVLQNVNNTSRILWNPDIPEAIDFRNSLACHGIDFDVEIGVIEGGNRAVPLSDEFLRLYPRKSVNELQITEEEGIFIVDATIVSVMKDEQWWYGACKCHKAVTPDGGLYYCSNCSTHVVEVTPRYKLRVEVFRWDDSASFILFDSDCVYLLGKTCKDLLAECRGLKAGEHPPDFRCLIGKDLLFKVEKTAEYAFSYDDSFKVKKVCDDKEIIQQYKKSFSVETPLKVFIVNLVFKNN. 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10525 310 Gene3D - 1 108 IPR012340 -
Seca3g10525 310 Pfam Replication factor-A C terminal domain 149 233 IPR013955 -
Seca3g10525 310 SUPERFAMILY Nucleic acid-binding proteins 1 106 IPR012340 -
Seca3g10525 310 Gene3D - 129 291 IPR012340 -
Seca3g10525 310 SUPERFAMILY Nucleic acid-binding proteins 132 277 IPR012340 -
Seca3g10525 310 CDD RPA1_DBD_B_like 1 101 - -
Seca3g10525 310 CDD RPA1_DBD_C 144 278 IPR047192 -
Seca3g10525 310 PANTHER OS03G0429900 PROTEIN 62 268 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10525 Seca-Chr3 250627058 250628668 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10525 58 231 Core DNA Replication Machinery Family AT5G08020 27.717 3.03e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10525 - - lja:Lj3g3v3527180.1 314.694