Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10521 ATGGCCACCGCCATCGTTGCATTCGACCCCGACGGAAGCGGCGACGAGGGGTTGCTGACGCCAGGCGAAGGCGGTGGCGGCAAAGGCAAAAGCAGAGACAGAGTAAAGGGTCCTTGGTCTCCGGAAGAGGACGCCATTCTGAGCCGCCTTGTAAGCAAGTTCGGCGCCAGAAACTGGAGCCTCATCGCTCGTGGGATCGCCGGAAGATCCGGCAAGTCCTGCCGGCTCCGGTGGTGCAATCAGCTCGATCCTTCCGTGAAGCGCAAGCCCTTCACTGAAGAGGAGGACCGGATCATAGTTGCTGCTCATGCAATCCATGGTAACAAATGGGCAGCCATAGCCAGGTGTCTACCTGGAAGAACAGATAATGCCATTAAGAACCACTGGAATTCTACTTTGAGGCGTCGGGGAGTTGAACTTGATAAGATTAAGTTAGAATCTGGTAATACAGTGGAAGATTTTAGCTTGGACAAAGCCAAAGCATCATCGGAAGACACACTATCATGTGATGTTAATTCCTTGAAATCCTCAGAAGGAAGAGATGTCAGTTCTATGGAAATCATGGATGATAAATATAAAGACAGAGCTCAGACTGAGGGTCAATTAAACCATGAAGTCAAGGATCTGCCTACCCTTTTTCGGCCAGTAGCACGTGTAAGTGCTTTTAGTGTATATCAGTCTTTCAATGGTTCACAGCCTTCAACATCAATTCCAAGACCTGTTCCAATGCAAGGGCCCATTTTACAATCATCAAAACCAGATCTTGAATTTTATAAAATGTTCGAAGGAATTTATGGTGACCAGTCAGTGCCTCACCAGTGTGGCCATGGATGCTGTGCTGCTCCAAATGGTCAAATCTCTGAAAGCTCTTTGTTGGGACCAGAATTCATCGAATTTTCAGAACCTCCATCTTTCCCAAGTTTTGAGTTGGCTGCAATAGCTACAGACATTAGTAACCTTGCTTGGCTTAAAAGTGGATTAGAGAATAGTAGCGTCAAAATGATGGGTGACACCGCTGGCAGGGTGATGTCTAAAGGATCTCATGTACATATTGGCCATTAG 1062 0.4727 MATAIVAFDPDGSGDEGLLTPGEGGGGKGKSRDRVKGPWSPEEDAILSRLVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPSVKRKPFTEEEDRIIVAAHAIHGNKWAAIARCLPGRTDNAIKNHWNSTLRRRGVELDKIKLESGNTVEDFSLDKAKASSEDTLSCDVNSLKSSEGRDVSSMEIMDDKYKDRAQTEGQLNHEVKDLPTLFRPVARVSAFSVYQSFNGSQPSTSIPRPVPMQGPILQSSKPDLEFYKMFEGIYGDQSVPHQCGHGCCAAPNGQISESSLLGPEFIEFSEPPSFPSFELAAIATDISNLAWLKSGLENSSVKMMGDTAGRVMSKGSHVHIGH. 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10521 353 Gene3D - 90 136 - -
Seca3g10521 353 CDD SANT 90 133 IPR001005 -
Seca3g10521 353 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 87 137 IPR017930 -
Seca3g10521 353 MobiDBLite consensus disorder prediction 1 39 - -
Seca3g10521 353 CDD SANT 38 80 IPR001005 -
Seca3g10521 353 SUPERFAMILY Homeodomain-like 33 129 IPR009057 -
Seca3g10521 353 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 31 86 IPR017930 -
Seca3g10521 353 Gene3D - 35 87 - -
Seca3g10521 353 SMART sant 87 135 IPR001005 -
Seca3g10521 353 SMART sant 35 84 IPR001005 -
Seca3g10521 353 FunFam MYB transcription factor 36 87 - -
Seca3g10521 353 Pfam Myb-like DNA-binding domain 39 96 - -
Seca3g10521 353 ProSiteProfiles Myb-like domain profile. 83 133 IPR001005 -
Seca3g10521 353 ProSiteProfiles Myb-like domain profile. 31 82 IPR001005 -
Seca3g10521 353 PANTHER MYB PROTEIN-RELATED 36 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10521 Seca-Chr3 250565768 250569901 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10521 24 353 MYB Transcription Factor Family AT3G09230 52.493 1.29e-114 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca3g10521 Myb_DNA-bind_6 2.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10521 K09422 - gmx:100813406 555.444