Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10501 ATGGCTGCTGTAAATGAAGGCGCTGAACAGGAATTTGCACCACAAAATAAGAAGCCACCTTCTGAGGATGAGAAGAGGAAGAAGAAAATTGTGCCTGGGAGTTTGATGAAAGCTTTGATGAGGCCTGGTGGGGGTGATTCTGGACCTTCAGATGGTGACCAGGTTATCTATCACTGCACAATTCGAACTTTGGATGGAGTAATTGTGGAATCTACCAGATCAGAACATGGAGGTGAGGTAACCTTTTATGTCATGGAAACAGGCAGGGGCACACCGATAAGACATGTTTTGGGCAAAAGCAAGATGCTATTGGGCTTGCTAGAAGGAATTCCAACAATGTTGAAGGGTGAAGTGGCAATGTTCAAGATGAAGCCTCAGTTGCATTATGGTGAGGATGATTGTCCTATTTCTGCTCCTGATGGTTTTCCTAAGGACGATGAACTTCATTTTGAAATTGAGATGATGGAATTTTTCAAAGCCAAGGCAAGGATATATTTCCAGGTTGTTACTGATGATATGGGAGTTGTAAAAAAGGTAGTATGTGAAGGGCAGGGTTGGGAATCTCCAAGAGAACCTTATGAAGTAAAGGCTTGGATTTCAGCAAAGACAGTGGCTGGGAAATTGATCATGTCACATACAGAAGGAGAACCATACTTCTTCACATTTGGAAAATCAGAGGTACCTAAAGGTCTTGAAATGGGGATAGGAACAATGGTTCGGGAAGAGAAGGCTGTTATATATGTTACCCGCCAGTATTTAACTGAGTCTCCTCTAATGTCTCTAACGGAAGATTATGATGAAGTCCACTTTGAAGTGGAGCTTGTTCACTTTATTCAAGTGAGGGACATGCTTGGAGATGGACGCCTAATAAAACGCCGGATTCGTGATGGAAAAGGTGACTTTCCAATGGATTGCCCACTTCATGATAGTCTACTCCGTGTTCATTACAAGGGCACTATCCTCAATGAAGAAAAAAGGGTATTTTATGATACAAGAGTTGATAATGATGGTCAGCCATTGGAGTTCTGTTCTGGAGAAGGCCTTGTACCAGAGGGATTTGAAATGTCTGTTCGTCTAATGCTTCCTGGAGAGATAGCTCTTGTCACATGTCCCCCTGACTATGCTTATGATAAGTTCCCCAGGCCTTCAAATGTCCCCGAGGGTGCTCATGTTCAATGGGAAATTGAGCTTCTAGGTTTTGAAATGCCAAAGGACTGGACTGGAATGGACTTTAAAAGTATAATGAATGAAGCTGAAAATATCAGAAACACGGGTAACAGGCTATTCAAAGAAGGGAAATATGAACTTGCAAAGGCAAAGTATGAAAAGGTGCTTCGAGAATTTAATCACGTTAATCCACAAGATGACGAGGAAGGAAAAGTTTTTGTAGACACACGTAATTTGCTACACCTGAATGTTGCTGCATGCTATCTAAAGTTGGGAGAATGCAAAAAGTCCATTGAGACTTGCAATAAGGTTTTGGAAGCAAATCCTGCACATGTCAAGGGTCTTTATCGCCGTGGAATGGCCTACATGGCTGCCGGAGATTTTGATGAAGCAAGGGCTGATTTCAAAATGATGATGAAAGTCGACAAGTCAACTGAATCAGATGCAACTGCAGCTCTTTTAAAACTGAGGCAAAAGGAGCAGGAAGTAGAGAAGAAAGCTCGGAAACAATTTAAAGGGCTATTTGATAAGAAGCCTGGAGAAATTGCAGAAGCTAAAGCTAACGAAGATGGAGATGAGATGACAAGTGAAAGCCAGAAGGATGGTGAAGTACATGGGGACTCAGATGGAACAAATTCAGAGGATTCACATGAAGCGGCACCCCATGCACATCATATGGGTTGGTTCTCTCACTTTTGGTCTACTGGGACAAAACTTTTTTCATCTCTTGGGCTTCAAAGATGTGCCATACTATAA 1923 0.4223 MAAVNEGAEQEFAPQNKKPPSEDEKRKKKIVPGSLMKALMRPGGGDSGPSDGDQVIYHCTIRTLDGVIVESTRSEHGGEVTFYVMETGRGTPIRHVLGKSKMLLGLLEGIPTMLKGEVAMFKMKPQLHYGEDDCPISAPDGFPKDDELHFEIEMMEFFKAKARIYFQVVTDDMGVVKKVVCEGQGWESPREPYEVKAWISAKTVAGKLIMSHTEGEPYFFTFGKSEVPKGLEMGIGTMVREEKAVIYVTRQYLTESPLMSLTEDYDEVHFEVELVHFIQVRDMLGDGRLIKRRIRDGKGDFPMDCPLHDSLLRVHYKGTILNEEKRVFYDTRVDNDGQPLEFCSGEGLVPEGFEMSVRLMLPGEIALVTCPPDYAYDKFPRPSNVPEGAHVQWEIELLGFEMPKDWTGMDFKSIMNEAENIRNTGNRLFKEGKYELAKAKYEKVLREFNHVNPQDDEEGKVFVDTRNLLHLNVAACYLKLGECKKSIETCNKVLEANPAHVKGLYRRGMAYMAAGDFDEARADFKMMMKVDKSTESDATAALLKLRQKEQEVEKKARKQFKGLFDKKPGEIAEAKANEDGDEMTSESQKDGEVHGDSDGTNSEDSHEAAPHAHHMGWFSHFWSTGTKLFSSLGLQRCAIL. 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10501 640 PANTHER INACTIVE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP6 165 279 - -
Seca3g10501 640 FunFam Peptidylprolyl isomerase 168 278 - -
Seca3g10501 640 MobiDBLite consensus disorder prediction 571 609 - -
Seca3g10501 640 MobiDBLite consensus disorder prediction 1 52 - -
Seca3g10501 640 Gene3D Tetratricopeptide repeat domain 411 566 IPR011990 GO:0005515
Seca3g10501 640 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 309 401 IPR001179 GO:0003755
Seca3g10501 640 Gene3D - 2 166 IPR046357 GO:0003755
Seca3g10501 640 SUPERFAMILY FKBP-like 266 400 - -
Seca3g10501 640 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 52 158 IPR001179 GO:0003755
Seca3g10501 640 ProSiteProfiles TPR repeat profile. 501 534 IPR019734 GO:0005515
Seca3g10501 640 FunFam Peptidylprolyl isomerase 279 403 - -
Seca3g10501 640 SUPERFAMILY FKBP-like 24 162 - -
Seca3g10501 640 FunFam Peptidylprolyl isomerase 9 161 - -
Seca3g10501 640 Gene3D - 280 400 IPR046357 GO:0003755
Seca3g10501 640 Gene3D - 167 279 IPR046357 GO:0003755
Seca3g10501 640 FunFam Peptidylprolyl isomerase 406 562 - -
Seca3g10501 640 SMART tpr_5 501 534 IPR019734 GO:0005515
Seca3g10501 640 SMART tpr_5 418 451 IPR019734 GO:0005515
Seca3g10501 640 SMART tpr_5 467 500 IPR019734 GO:0005515
Seca3g10501 640 MobiDBLite consensus disorder prediction 16 31 - -
Seca3g10501 640 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 310 398 IPR001179 GO:0003755
Seca3g10501 640 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 49 154 IPR001179 GO:0003755
Seca3g10501 640 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 192 274 IPR001179 GO:0003755
Seca3g10501 640 SUPERFAMILY FKBP-like 168 277 - -
Seca3g10501 640 Pfam Tetratricopeptide repeat 502 525 IPR019734 GO:0005515
Seca3g10501 640 SUPERFAMILY TPR-like 415 556 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10501 Seca-Chr3 250271607 250284395 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10501 35 566 Calmodulin-binding Proteins AT5G48570 29.705 4.51e-60 209