Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10472 ATGGCGGAGGGTTTTGAGGGTTACCATGTCCCACAACAAAGCAGAAGAGATAAGCTTAGAGTTGTTGTGGCTCACAACGTTGAACCTTCACCTTTATACCAAGACCCTTCTTCCTTTCTTTCCTCTGATTTCTTAACGTTTTCCAAACAAAACTTCCCTTCTTCTCTCAAGGAACAACCTTCCTCCAATTTCATGATGCGCTTCATGAACAACGCTTCTTCCTCTTCTTCGAATAGTAATAATAATTCTTCTTCAGTTTCTCATCACCATGCTCCTTACTTGGACCCTCAATCGTCTTTACCTCTGAACCCAAGTACAATTCAAGTCATTAACAACAACAACAACAACCCTTTTCTCTATAATGTTCAGAACCTTCGGGAGTTTGATCAGAGGAATGGGAGTGAAATGAATGCTATGGTGTTCAAGCATGAGCCTTTATCTTTGTCTCTGTCATCACATAACAACACTAGTGCACACCATCACCCTCTGGAGCTGAATCTTCAGAGATATGGCTCTGTGATTTATGGTGGTGATAAGGGGGGTGGTGGTGGGTGGGTGATTCCGGGGTTGGTTGGAGGAGGTAGTGGTTCAGGGCCATTTACTGGTTATGCTTCTGTGTTGAAAGATTCGAGATTCTTGAAGCCTGCACAGCAATTATTGGAAGAGATATGTGATGTTGGGGGTCGTGCTGAGAAAGGGGTGATGGTGGTGGCTGATGCATCCTTCATGGACCCTCCTCGTCCTCCTCCGGAGAGCTTCACTGAAGATCCACTTGCTGGTGATGATGGTCGCAAGAAGTCAAGGCTTTTGACTTTGCTTGATGAGGTTTACAGGAGGTACAGGCAATACTATCAACAAATGCAGGCGGTGGTAGCATCTTTTGAGTATGTTTCAGGCCTCAGCAATGCAGCTCCTTATGCAAGTTTGGCTATAAAAGCCATGTCCAAACATTTCAGGTGCTTAAAGAATGCAATTACTGACCAGCTTCAGTTCACCAATAAGGCTCATTTTCACATAAGCAACAGTAAAGAAGGATCTCCAAAGTTTGGAAACAGTGATAGAGGCCCTTACAGCCAAAGATCAGGGTTTCTTGAGCATCAACCTGTTTGGCGACCTCAAAGGGGACTCCCCGAGCGTGCTGTGACTGTTCTTAGAGCATGGTTGTTTGAGCACTTTCTGCACCCTTATCCCACTGATACAGACAAGCTAATGTTGGCTAAACAAACCGGTCTGTCTCGGAGTCAGGTGTCTAATTGGTTCATCAATGCAAGAGTAAGGCTCTGGAAACCAATGGTGGAAGAAATACATATGCTAGAAACGCGACAAGCTCAAAAGAATTCACAGAAGGAAGAACATTGTAGGAATAAACCAAGTGAGAATTTGCCTTCAGACAACTCTCTTGTTTCTGAGAATCCATCTACCTCCACAGATAAATATCAGGATGCTCCTTACAAACGCACTATAAATGAAATTCCTAATATACCAGTTAGGAGTCAAGAACAACTGAATCTGCCCTGCACAGGCAACCAACCAGTAGGTGTTGGAGTGAACATTGGGAGTGGAAGCAATAATAGTGTGTCACTGACACTAGGTCTTTATCAAAATCATGGGATTGGTTTAGCTGAACCTTTTCCTTTGAGTGCAGCTCAGCGTTTTGGTTTAGCTCTTGAAACCAATAATGAAGGTTATGTTATGAGTGGTTTTGAATCACAAAATAGGCATTTTGGAAGAGAGGTTATTGGAAGCCAACTGTTGCATGACTTTGTAGGTTGA 1773 0.4349 MAEGFEGYHVPQQSRRDKLRVVVAHNVEPSPLYQDPSSFLSSDFLTFSKQNFPSSLKEQPSSNFMMRFMNNASSSSSNSNNNSSSVSHHHAPYLDPQSSLPLNPSTIQVINNNNNNPFLYNVQNLREFDQRNGSEMNAMVFKHEPLSLSLSSHNNTSAHHHPLELNLQRYGSVIYGGDKGGGGGWVIPGLVGGGSGSGPFTGYASVLKDSRFLKPAQQLLEEICDVGGRAEKGVMVVADASFMDPPRPPPESFTEDPLAGDDGRKKSRLLTLLDEVYRRYRQYYQQMQAVVASFEYVSGLSNAAPYASLAIKAMSKHFRCLKNAITDQLQFTNKAHFHISNSKEGSPKFGNSDRGPYSQRSGFLEHQPVWRPQRGLPERAVTVLRAWLFEHFLHPYPTDTDKLMLAKQTGLSRSQVSNWFINARVRLWKPMVEEIHMLETRQAQKNSQKEEHCRNKPSENLPSDNSLVSENPSTSTDKYQDAPYKRTINEIPNIPVRSQEQLNLPCTGNQPVGVGVNIGSGSNNSVSLTLGLYQNHGIGLAEPFPLSAAQRFGLALETNNEGYVMSGFESQNRHFGREVIGSQLLHDFVG. 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10472 590 CDD homeodomain 370 431 IPR001356 GO:0003677
Seca3g10472 590 MobiDBLite consensus disorder prediction 441 483 - -
Seca3g10472 590 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 85 451 - -
Seca3g10472 590 SMART prehox3 201 327 IPR006563 -
Seca3g10472 590 MobiDBLite consensus disorder prediction 459 482 - -
Seca3g10472 590 Pfam Associated with HOX 206 326 IPR006563 -
Seca3g10472 590 MobiDBLite consensus disorder prediction 441 458 - -
Seca3g10472 590 ProSiteProfiles 'Homeobox' domain profile. 367 430 IPR001356 GO:0003677
Seca3g10472 590 MobiDBLite consensus disorder prediction 69 107 - -
Seca3g10472 590 SMART HOX_1 370 434 IPR001356 GO:0003677
Seca3g10472 590 FunFam BEL1-like homeodomain protein 9 373 435 - -
Seca3g10472 590 Gene3D - 373 435 - -
Seca3g10472 590 SUPERFAMILY Homeodomain-like 372 437 IPR009057 -
Seca3g10472 590 Pfam Homeobox KN domain 387 426 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10472 Seca-Chr3 249874628 249885277 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10472 134 590 Homeobox Transcription Factor Family AT5G02030 49.278 2.83e-114 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Seca3g10472 POX 9.4e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10472 - - gmx:100805512 777.704