Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca3g10448 | ATGGAATTTAATTCCCAAAATTCTCAAAAATCTGAGCATGTAAGATTGATTTGTGATGATCAAGGTGGTCATGGACAAATTAGATCTTATACTTGTGCTTTTTGCAAGAGAGTGTTCTCAAATGCACAGGCACTTGGAGGTCACATGACAACACATAGAAGAGACAGAGCCAAGCTTAGGCAATCTTATGAAGAAAATTTGCTTTCTTTGGACATGTCAAAAAAGAGCACCACTTATCATGATGAGCCTCAGCCTTTGGAAGAGAATTTTTCGTTTCGATTGGATTATGGTAATCAACAGAAAGTAGATACTAGAAATGGTAGAAAGCCATGTACTTTTTCTGACAAGGATGATCAAAGGGAACTTCCTCATCTTCCTTTATTTGTTGGGATGCCATGTTCAAGCAATGAGGTAAAGGGAGGTAAAATTGTGGTTGAAAGGATTGAAGAGAAGAAAGATGATTTAGACCTTGAGCTTCGTTTAGGCCCTGAGCCGCGGGAGGAACCAACTTTGAGCACAAGAGAATTCTTTTGA | 534 | 0.3876 | MEFNSQNSQKSEHVRLICDDQGGHGQIRSYTCAFCKRVFSNAQALGGHMTTHRRDRAKLRQSYEENLLSLDMSKKSTTYHDEPQPLEENFSFRLDYGNQQKVDTRNGRKPCTFSDKDDQRELPHLPLFVGMPCSSNEVKGGKIVVERIEEKKDDLDLELRLGPEPREEPTLSTREFF. | 178 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca3g10448 | 177 | SUPERFAMILY | beta-beta-alpha zinc fingers | 28 | 56 | IPR036236 | - | |
Seca3g10448 | 177 | Pfam | C2H2-type zinc finger | 30 | 54 | - | - | |
Seca3g10448 | 177 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 30 | 57 | IPR013087 | - | |
Seca3g10448 | 177 | PANTHER | OS07G0101800 PROTEIN | 1 | 165 | - | - | |
Seca3g10448 | 177 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 32 | 52 | IPR013087 | - | |
Seca3g10448 | 177 | Gene3D | Classic Zinc Finger | 4 | 86 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca3g10448 | Seca-Chr3 | 249599264 | 249599818 | Dispersed/Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca3g10448 | 26 | 173 | C2H2 Transcription Factor Family | AT3G53820 | 31.481 | 1.05e-15 | 68.6 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Seca3g10448 | zf-C2H2_6 | 5.7e-07 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca3g10448 | - | - | ccaj:109793777 | 152.525 |