Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10448 ATGGAATTTAATTCCCAAAATTCTCAAAAATCTGAGCATGTAAGATTGATTTGTGATGATCAAGGTGGTCATGGACAAATTAGATCTTATACTTGTGCTTTTTGCAAGAGAGTGTTCTCAAATGCACAGGCACTTGGAGGTCACATGACAACACATAGAAGAGACAGAGCCAAGCTTAGGCAATCTTATGAAGAAAATTTGCTTTCTTTGGACATGTCAAAAAAGAGCACCACTTATCATGATGAGCCTCAGCCTTTGGAAGAGAATTTTTCGTTTCGATTGGATTATGGTAATCAACAGAAAGTAGATACTAGAAATGGTAGAAAGCCATGTACTTTTTCTGACAAGGATGATCAAAGGGAACTTCCTCATCTTCCTTTATTTGTTGGGATGCCATGTTCAAGCAATGAGGTAAAGGGAGGTAAAATTGTGGTTGAAAGGATTGAAGAGAAGAAAGATGATTTAGACCTTGAGCTTCGTTTAGGCCCTGAGCCGCGGGAGGAACCAACTTTGAGCACAAGAGAATTCTTTTGA 534 0.3876 MEFNSQNSQKSEHVRLICDDQGGHGQIRSYTCAFCKRVFSNAQALGGHMTTHRRDRAKLRQSYEENLLSLDMSKKSTTYHDEPQPLEENFSFRLDYGNQQKVDTRNGRKPCTFSDKDDQRELPHLPLFVGMPCSSNEVKGGKIVVERIEEKKDDLDLELRLGPEPREEPTLSTREFF. 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10448 177 SUPERFAMILY beta-beta-alpha zinc fingers 28 56 IPR036236 -
Seca3g10448 177 Pfam C2H2-type zinc finger 30 54 - -
Seca3g10448 177 ProSiteProfiles Zinc finger C2H2 type domain profile. 30 57 IPR013087 -
Seca3g10448 177 PANTHER OS07G0101800 PROTEIN 1 165 - -
Seca3g10448 177 ProSitePatterns Zinc finger C2H2 type domain signature. 32 52 IPR013087 -
Seca3g10448 177 Gene3D Classic Zinc Finger 4 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10448 Seca-Chr3 249599264 249599818 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10448 26 173 C2H2 Transcription Factor Family AT3G53820 31.481 1.05e-15 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca3g10448 zf-C2H2_6 5.7e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10448 - - ccaj:109793777 152.525