Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10447 ATGGAGAACTCTGAATTTTTATCTAGCATTAAGTCTTATGGTAAGGGTAGGGGAGAGGATTCTGAAATGTATGAGAAGGATGAAAAAGAAGATACCGGTGTAGGTCATGAAGCGGTTAATAGGTTGCTTTTGTTGACTGCTGATGAGATTATGTGCCTTGAATTTGGCGGTGAAGAAGAGGCATATAATTTTTATCAATTATATGCGAAGTATCATGGGTTTGTGGTTAGAAAAGATGACACAACAAAGGATATCAGGGGTAATATTATTATGCGACAGTTTGTTTGCAATAAGGAGGGTTTAAGAAAGAAGAAACACTTTATGAGGGTAGATAGGAAAAGGGAGCATAGGCCACTGACCCGTACAAACTGTCTAGCTAAGCTTCGTATACATTACCACCACAAGAGTTTAAAGTGGAAAGTGGTGTCATTTGAGCAATGTCATAACCATGAGCTTACCCCTTCAAGATTTGTCCACCTACACCCTGCTTACCGAAGGTTAACAGATGCTGATAAATCTCAGGTTAATAGTTTGCATGCATATGGTCTTAGAGGTTGTCACATTATGGGCTACCTAGTGGCTCAAAAGGGTGGATATTGTCGTGTTGGTTTTACGAAGAAGGACATGTACAATTATCTTGACCGAAAAAATCAGGCAAAGGTAGGAGGAAAAAAAAGAAATTATTTAAAAGATATACTGGAAGACATTCGCAAGCTGACTATTAAGTATGAGAATTTGGGGGATAAGGGATGCACAAATGGTAACCCAACAATTGAGCATGTGGGTGATCCAAGTAAAGTGAAAACTAAAGGTGCACCTAAGAAGAAAAAGGATATGAAGAGGAGGAGAAGACATTGTTCCAATTGTAGTAGCACAGGACACACAATAAGGAGATGCCCATTAAGATATAGCCCGAATGAGAAGAGTAAAAATGATGTAGAGTTATCAAATTCAAAAAACAATGGTGACACTGAAGCAAATGACAGTGAGAAAGATGTAATGGATACTGTTGAAGCAAATGGTGAACAATCAAATGCTAATGAGAAGAAGGTTGAGGAATCAAATGGACAGGAAAATAATGGACAACAAACCAATGTTCAGTTTGATTGTTCAAGGCAGAATGTGAAAAAAGCAAAAGAGAAATTAAGTGGATTGCGTAAACAAAAAGGAAAGACTGTGAGAGAAGATTCAAATCCAAAACATTCTGAGGCAGCGGAAATAAAACCGGGTGGTTGTTCAGATGGAGTTAATGTTGGAAATGGTAAAGTGCCACCTATGATGCCAAATATGGTTCCGGCAATACATTATCCTGGTTATGGAATGTTCAGTCAAGGATATCCAATACATCCACACTTTAGTCGTCCTTCAATTCAGAATCCAAATATGGGAGTCCCCATGTACAATCAAAATTACCAGTTTCCTATCTATCAGCAACAAGCTCAGCCTTCAATGTATTCACATGGAGCCCGGTTTTATCCTGGTATGTGGAACCCACCTACTAATGGTACTTCTATGAATGATCTGTTGCAACAAGTAATGAATAATGGTGTTCAAAGAAGTGAAAAGGAAGGAGAACATTAA 1581 0.3833 MENSEFLSSIKSYGKGRGEDSEMYEKDEKEDTGVGHEAVNRLLLLTADEIMCLEFGGEEEAYNFYQLYAKYHGFVVRKDDTTKDIRGNIIMRQFVCNKEGLRKKKHFMRVDRKREHRPLTRTNCLAKLRIHYHHKSLKWKVVSFEQCHNHELTPSRFVHLHPAYRRLTDADKSQVNSLHAYGLRGCHIMGYLVAQKGGYCRVGFTKKDMYNYLDRKNQAKVGGKKRNYLKDILEDIRKLTIKYENLGDKGCTNGNPTIEHVGDPSKVKTKGAPKKKKDMKRRRRHCSNCSSTGHTIRRCPLRYSPNEKSKNDVELSNSKNNGDTEANDSEKDVMDTVEANGEQSNANEKKVEESNGQENNGQQTNVQFDCSRQNVKKAKEKLSGLRKQKGKTVREDSNPKHSEAAEIKPGGCSDGVNVGNGKVPPMMPNMVPAIHYPGYGMFSQGYPIHPHFSRPSIQNPNMGVPMYNQNYQFPIYQQQAQPSMYSHGARFYPGMWNPPTNGTSMNDLLQQVMNNGVQRSEKEGEH. 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10447 526 Coils Coil 368 395 - -
Seca3g10447 526 MobiDBLite consensus disorder prediction 373 403 - -
Seca3g10447 526 MobiDBLite consensus disorder prediction 254 413 - -
Seca3g10447 526 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 33 229 - -
Seca3g10447 526 ProSiteProfiles Zinc finger CCHC-type profile. 286 300 IPR001878 GO:0003676|GO:0008270
Seca3g10447 526 MobiDBLite consensus disorder prediction 1 32 - -
Seca3g10447 526 SUPERFAMILY Retrovirus zinc finger-like domains 274 304 IPR036875 GO:0003676|GO:0008270
Seca3g10447 526 MobiDBLite consensus disorder prediction 15 32 - -
Seca3g10447 526 MobiDBLite consensus disorder prediction 270 288 - -
Seca3g10447 526 MobiDBLite consensus disorder prediction 356 372 - -
Seca3g10447 526 Coils Coil 229 249 - -
Seca3g10447 526 Pfam FAR1 DNA-binding domain 63 153 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10447 Seca-Chr3 249593894 249597481 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca3g10447 FAR1 1.6e-20 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10447 - - ccaj:109792835 253.447