Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10444 ATGGAACAGGGTCAATGTTGGATGCAGACAAAGAGGAAGTACTTATCTATGAGTTCCAATCTTGCTTCACCAATAACTAACCCTTCTTCCTATGGTGACTCATGGGAAGAACAAGCTTTTGCAGAAGATGCAGCTGGCTCTCTTGTTGGTGGCTGCATATGGCCACCAAGATCATACTCTTGCAGCTTTTGCAGAAGAGAGTTCAGGTCAGCACAAGCACTAGGTGGCCATATGAATGTTCATAGAAAAGATAGAGCAAGACTAAAACAACCCTCTAGTCCCCACAACAATAATGAAATCCTATATCATGACCTTGAAACTCATCCTCACCTCCACAATCCAGTTCAAACTCCTTTGAGTTACCTATACCCTTCTCCTGTTTGTGGATTGGCTTATAAAACTAACCCTAATTCTGATCCTGATTTTCTTGCCTCACCTTCATCACCCTCACCTTCCAAGGCTTTATTAGCTCCATCACCTAATGGCAATAATACCAATAAGTTAAGAGAGGAAACCCTGATTCCACTTTATAATTCCTCTATTCTCCATAAGGTTGCCCCTGTCAATTCCTCTGAATCATGGCCAAATTTGGTTGCAGATCACAGATTATATTCATGTAAGTTCAACCCTGAAGTTGATGTTGAAAAAGTCTCCAAGGGAATGGATTCTAGGTGTAGAGGTAAAGGGGGTAACAATGATGATGATGATGTGGCTATGAGCTTGAATTTGGTTGTGTGTAGAAGTCACTCACCTGTGAAGTTTGAGAGTTCTAAAGAAGCAGAAGATATCAATTGCAAGAAGAGGAAAACAGATGCTTCCTCAAATCAGTTTTTCCCAAAGTCAAGCTCTGTTGATAGACATGATCACAAGCAACCACAGATGTTTGAATTTAGCCCTAGCTCCATTGAAGAGCTAGATCTGGAGTTAAGGCTTGGTAACAAGTCCAAGGTATAG 954 0.4119 MEQGQCWMQTKRKYLSMSSNLASPITNPSSYGDSWEEQAFAEDAAGSLVGGCIWPPRSYSCSFCRREFRSAQALGGHMNVHRKDRARLKQPSSPHNNNEILYHDLETHPHLHNPVQTPLSYLYPSPVCGLAYKTNPNSDPDFLASPSSPSPSKALLAPSPNGNNTNKLREETLIPLYNSSILHKVAPVNSSESWPNLVADHRLYSCKFNPEVDVEKVSKGMDSRCRGKGGNNDDDDVAMSLNLVVCRSHSPVKFESSKEAEDINCKKRKTDASSNQFFPKSSSVDRHDHKQPQMFEFSPSSIEELDLELRLGNKSKV. 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10444 317 Gene3D Classic Zinc Finger 56 112 - -
Seca3g10444 317 MobiDBLite consensus disorder prediction 139 167 - -
Seca3g10444 317 SUPERFAMILY beta-beta-alpha zinc fingers 56 85 IPR036236 -
Seca3g10444 317 PANTHER OS07G0101800 PROTEIN 19 314 - -
Seca3g10444 317 MobiDBLite consensus disorder prediction 270 299 - -
Seca3g10444 317 ProSitePatterns Zinc finger C2H2 type domain signature. 61 81 IPR013087 -
Seca3g10444 317 Pfam C2H2-type zinc finger 59 83 - -
Seca3g10444 317 SMART c2h2final6 59 81 IPR013087 -
Seca3g10444 317 ProSiteProfiles Zinc finger C2H2 type domain profile. 59 86 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10444 Seca-Chr3 249564891 249565844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10444 1 92 C2H2 Transcription Factor Family AT5G06070 56.250 1.06e-26 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca3g10444 zf-C2H2_6 1.1e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10444 - - gmx:100801427 419.468