Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10434 ATGTTGAACCGTGGGTCAAATGTTTCGGCTGAAGCAGTTGGTGGTTCGGGTGAGAGTGACGATGAGCTGTATGAGCAGCAATGGAAGGCTTGCGCGGGACCACTGGTGGATGTTCCTCATGTTGGACAGAGGGTCTTCTATTTCCCTCAGGGACACATGGAACAATTAGAGGCGTCCACTAATCAGGAACTGAATCAGAGGATCCCTCTCTTGAAACTTCCCACAAAGATCCTCTGTCGCGTCGTGAACGTCCATTTACTGGCTGAACAAGAAACGGATGAGGTCTATGCACAGATTACTTTGGTGCCAGAATCTAATCAAGATGAGCCTACAAGCCCTGATCCGTGCACTGCTGAACTTCCGAGGCCAACAGTTCACTCATTCTGCAAGGTCTTAACTGCTTCAGATACCAGCACACATGGTGGTTTCTCTGTTCTCAGGAAACATGCCACAGAATGTCTTCCTGCTTTGGACATGTCCCAACCAACACCAACTCAGGAATTGGTTGCCAAGGATCTTCATGGTTATGAATGGCGCTTTAAGCATATATTTAGAGGTCAGCCACGCAGACACCTGCTCACAACTGGATGGAGTACTTTTGTTACTTCCAAGAGATTAGTTGCTGGAGATACCTTTGTGTTTTTGAGAGGGAACAATGGCGAATTACGTGTGGGAGTTAGGCGTCTTGCTCGCCAGCCAAGTAGCATGCCATCGTCTGTGATCTCCAGTCAGAGCATGCACCTAGGAGTCCTTGCAACTGCCTCTCATGCTGTTGCAACTCAGACACTTTTTGTAGTATATTATAAGCCAAGGACGAGCCAGTTCATCATAAGCGTGAACAAGTTCTTGGAGGCTATAAACAATAAGTTCAGTGTTGGCATGAGGTTCAAGATGAGGTTTGAGGGGGATGCTGCTGCTGAGACTGACAAAAGATTTTCGGGTACCATAGTTGGAGTGGAAGATATTTCTCCCCATTGGGTGAATTCAAAATGGCGATCACTTAAGGTTCAATGGGATGAACCTGCAGCTGTTACAAGACCTGATAGGGTTTCACCATGGGAGATAGAACCCTTTGTGACTTCTACTCCTACTCCCCCAGTTCAACCTACAGTTGTAAAGACGAAAAGGCCTCGACCACCCAGTGAAATTCCAGATGTTGACACAACATCGGCTACCTCAGTTTTCTGGGATTCTGGGCTAACTCAGGCTGATAGGACACAACTCAGCGTTTTATCTGAAAGCAAAAGAAGTGATAGTACTGGTATGTGGCATCATAAGCAAATTGATATGAATAGTAAAAGTAACAGCAACACTGTTATATCGAGGAATCAGCCAGAAGGAAGTTGGCTATCTTCTCCCCATTCTAGTTGTCCTTCTCATGTATTTCCGGACACAACAGATGATAGCAAGAGTGTCTCAGCATGGCCTGTTTCAAAGCCTAACTCATCCAAACTGAACATCGATCATGTGCTTGATCAAGTTGAGAAGGAGAACAAAGTTGAGTCTGGTACAAGTTATCGATTGTTTGGAATTGAGCTTATCGATCATTCCAGAAACTCACCTGCTGTTGAGAAGGCGCCTTCACATGCTGTAAATTTACCCAGAGTTACCACTGAGGTCTGTGCAAGCACCTTGTCCAGAACTGATACTGGTCATAAGTCTGATGTCTCAAAGGCTTCTAAGGAGAGGAAACAAGAACAGCAGCAAATATCAACACAGGAGACTCAGAGCATGCATATTTGTGGCAGAAGTCGCACCAAGGTTAAAATGCAGGGAGTTGCAGTGGGTCGTGCTGTGGATTTGACCATGTTGGATGGTTACAATCAACTTATAGATGAATTGGAGGAGATGTTTGACATAAAGGGACAACTTCGACACAAGAATATGTGGAAAATTGTCTTCACTGATAATGAAGGGGATGACATGCTTATGGGCGATCATCCATGGCCTGAATTTTGTAATGTGGTGAGAAAAATCTCCATTCTTTCCAGCCAGGATGTGAAGATGAGTTCAGGAAGCAAGCTACCAATCTCTTCAATGGAAGAAGGGACTGTAATAAGCTCAGACACAACCGAAACCTGA 2082 0.452 MLNRGSNVSAEAVGGSGESDDELYEQQWKACAGPLVDVPHVGQRVFYFPQGHMEQLEASTNQELNQRIPLLKLPTKILCRVVNVHLLAEQETDEVYAQITLVPESNQDEPTSPDPCTAELPRPTVHSFCKVLTASDTSTHGGFSVLRKHATECLPALDMSQPTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGNNGELRVGVRRLARQPSSMPSSVISSQSMHLGVLATASHAVATQTLFVVYYKPRTSQFIISVNKFLEAINNKFSVGMRFKMRFEGDAAAETDKRFSGTIVGVEDISPHWVNSKWRSLKVQWDEPAAVTRPDRVSPWEIEPFVTSTPTPPVQPTVVKTKRPRPPSEIPDVDTTSATSVFWDSGLTQADRTQLSVLSESKRSDSTGMWHHKQIDMNSKSNSNTVISRNQPEGSWLSSPHSSCPSHVFPDTTDDSKSVSAWPVSKPNSSKLNIDHVLDQVEKENKVESGTSYRLFGIELIDHSRNSPAVEKAPSHAVNLPRVTTEVCASTLSRTDTGHKSDVSKASKERKQEQQQISTQETQSMHICGRSRTKVKMQGVAVGRAVDLTMLDGYNQLIDELEEMFDIKGQLRHKNMWKIVFTDNEGDDMLMGDHPWPEFCNVVRKISILSSQDVKMSSGSKLPISSMEEGTVISSDTTET. 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10434 693 Coils Coil 556 576 - -
Seca3g10434 693 SUPERFAMILY CAD & PB1 domains 579 660 - -
Seca3g10434 693 CDD B3_DNA 126 228 IPR003340 GO:0003677
Seca3g10434 693 Gene3D - 580 670 - -
Seca3g10434 693 Gene3D - 289 362 - -
Seca3g10434 693 Gene3D - 125 229 IPR015300 -
Seca3g10434 693 FunFam Auxin response factor 126 230 - -
Seca3g10434 693 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 22 669 IPR044835 GO:0003677|GO:0006355|GO:0009725
Seca3g10434 693 Pfam Auxin response factor 254 335 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Seca3g10434 693 FunFam Auxin response factor 289 362 - -
Seca3g10434 693 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677
Seca3g10434 693 Pfam B3 DNA binding domain 128 228 IPR003340 GO:0003677
Seca3g10434 693 MobiDBLite consensus disorder prediction 551 568 - -
Seca3g10434 693 SMART B3_2 128 230 IPR003340 GO:0003677
Seca3g10434 693 MobiDBLite consensus disorder prediction 427 457 - -
Seca3g10434 693 SUPERFAMILY DNA-binding pseudobarrel domain 119 257 IPR015300 -
Seca3g10434 693 MobiDBLite consensus disorder prediction 544 577 - -
Seca3g10434 693 ProSiteProfiles PB1 domain profile. 583 664 IPR000270 GO:0005515
Seca3g10434 693 MobiDBLite consensus disorder prediction 356 388 - -
Seca3g10434 693 Pfam AUX/IAA family 560 667 IPR033389 -
Seca3g10434 693 MobiDBLite consensus disorder prediction 672 693 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10434 Seca-Chr3 249374110 249379021 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10434 23 675 B3 DNA Binding Superfamily AT4G23980 57.839 0.0 701
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Seca3g10434 AUX_IAA 1.9e-12 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10434 K14486 - gmx:100803911 1133.63