Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10433 ATGTATCAATATCTCAGGCAGAGGATAAGGACTTGTCTAGCCCAAAGATTTTTCTCAAACAAGTACAAAATAAATAGTGCATATTTGCATTCTTCATCTGCACTTGTGACAAACGAAATGTCAAGCACTGCTGGTCTTGTGATCCCATGCAATGCTGCTGTTGCATGGGAAGCAGGGAAACCTTTGGTGATAGAACGTGTGGAGGTGGCACCACCACAGGCCAAGGAAGTGAGGATCAAAGTCAAATATACCTCACTTTGCCACACTGATCTCTACTGGTGGGAAGCCAAGGAGCAAACTCCTCTGTTTCCCCGAATTTTAGGCCATGAGGCAGCTGGAATTGTGGAGAGTGTTGGAGAAGGAGTCACAGATCTGCAGGTTGGGGATCATGTGTTACCAGTATTCACTGGGGAATGTGGTGAGTGTGCACATTGCAAATCTGAGGAAAGTAACATGTGTGACCTGTTGCGAATAGATACAGACAGAGGAGTCATGCATAGTGATGGTAAAAGCAGATTCTCCATTAACGGTACCCCAATATACCACTTTGTTGGCACATCCACTTTTAGTGAATACACTGTGGTACATTCTGGTTCCCTAGCAAAGATCAATCCACTAGCACCTTTGGATAAAGTCTGTGTCCTCAGTTGTGGCATCTCCACAGGGTTAGGAGCAACTTTAAATGTGGCAAAACCAAAGAAGGGCTCTACAGTAGCAGTATTTGGTCTTGGAGCTGTTGGTCTTGCTGCTGCTGAGGGTGCAAGAATTGCTGGTGCATCTAGAATTATTGGAATTGATTTGAATCCAAAGAGGTTTGAGGAAGCCAAAAAATTTGGGGTAACCGAATTTGTGAATCCAAAGGACTATGATAAGCCGGTTCATGAGGTAATTGCAGATATGACAAATGGAGGAGTAGACCGAAGTTTAGAGTGCACCGGAAACATCAATGCCATGATATCTGCTTTTGAATGTGTTCATGATGGGTGGGGTGTTGCTGTGCTTGTTGGAGTGCCCCATAAGGATGCAATTTTCATGACCAAGCCCATTAATATGCTCAATGAAAGAACACTCAAAGGAACTTTCTTTGGAAATTACAAGCCCAGGACTGACCTTCCCTCTGTTGTTGATATGTACATGAACAAGACATTGGAACTGGACAAGTTCATAACCCATAGAGTTCCTTTCTCTGATATCAACAAGGCATTTGATTTAATGTTGAGAGGAGAGGGACTAAGGTGTATCATTAGCATGGATAACTAG 1260 0.4341 MYQYLRQRIRTCLAQRFFSNKYKINSAYLHSSSALVTNEMSSTAGLVIPCNAAVAWEAGKPLVIERVEVAPPQAKEVRIKVKYTSLCHTDLYWWEAKEQTPLFPRILGHEAAGIVESVGEGVTDLQVGDHVLPVFTGECGECAHCKSEESNMCDLLRIDTDRGVMHSDGKSRFSINGTPIYHFVGTSTFSEYTVVHSGSLAKINPLAPLDKVCVLSCGISTGLGATLNVAKPKKGSTVAVFGLGAVGLAAAEGARIAGASRIIGIDLNPKRFEEAKKFGVTEFVNPKDYDKPVHEVIADMTNGGVDRSLECTGNINAMISAFECVHDGWGVAVLVGVPHKDAIFMTKPINMLNERTLKGTFFGNYKPRTDLPSVVDMYMNKTLELDKFITHRVPFSDINKAFDLMLRGEGLRCIISMDN. 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10433 419 Pfam Alcohol dehydrogenase GroES-like domain 75 202 IPR013154 -
Seca3g10433 419 FunFam Alcohol dehydrogenase class-P 222 360 - -
Seca3g10433 419 SUPERFAMILY GroES-like 43 225 IPR011032 -
Seca3g10433 419 PANTHER ALCOHOL DEHYDROGENASE 47 415 - -
Seca3g10433 419 CDD alcohol_DH_plants 48 415 - -
Seca3g10433 419 Gene3D - 58 409 - -
Seca3g10433 419 Pfam Zinc-binding dehydrogenase 245 375 IPR013149 -
Seca3g10433 419 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 208 380 IPR036291 -
Seca3g10433 419 SUPERFAMILY GroES-like 367 415 IPR011032 -
Seca3g10433 419 Gene3D - 222 360 - -
Seca3g10433 419 FunFam alcohol dehydrogenase 1-like isoform X1 58 221 - -
Seca3g10433 419 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 108 122 IPR002328 GO:0008270|GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10433 Seca-Chr3 249332341 249335862 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10433 51 419 Monolignol Biosynthesis Gene Families AT1G72680 23.885 2.40e-13 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10433 K18857 - qsu:112034402 668.692