Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10416 ATGGCCTCTTATTGGCTTTTAGCCTTCATGAAAGATTTCTCATCCGGTCACCCTAATTCATTCATCAACAACCTTGTTCTCAAGTATGGACAAACCGGTATTTACAAGACTCACTTGTATGGAAATCCAAGCATCATTATTTGTGAGTCTCAGATGTGTAGGCGAGTGCTCACAGATGATGTGAACTTTAAAAATGGTAATCCAAAATCCATCAAAAGATTGGTACGAATTAGTAGTTCCATCGATGATGTCTCTAGTGCAGAACGTAGGCGTTTTCGACGCCTGGTCATTGCTCCCCTTATGGGTCACAATGCATTAGCAATGTACCTAGAATGTATTGAGAATATCATGGTCAATTCGTTAGAAGAGTTGTCAAGTATGAAAAACCCGGTTGAGTTTTTGAAAGAGATGAAAAAGATTTCCTTTAAAGTCATCATGCACGTTTTTATGGGGTGCTCTTACAATGAACACATCAATACCAAAATAGGAAGTTCGTTTACCAATATATATAATGGCTTGTTCTCTATCCCCATTAACGCTCCCGGTTTTACTTTCCACAAAGCACTCAAGGTAATCAATGAAACGTTGCGTTGTACCAACATTGCCTTTGCAACTTTTCGAGAGGCAACTACTGACGTGAACATCAATGATTATATCATACCAAAAGGATGGAGAGTGCTAGTTTGGTTAAGAGCTATTCATATGAATCCTGAATATCACCCAAATCCAGAAGAATTTAATCCATCTAGATGGGATGATTACAATGCCAAAGCAAGAACCTTCCTTCCTTTTGGAGCAGGAAGTAGGCTTTGTCCCGGAAGTGACTTAGCGAAACTTGAAATTTTCGTATTTCTACATTATTTCCTCCTTAATTACAAGTTGGAGCGACTAAATCCAGAATGCCCGGTTACTAGCTTGCCATCACCAAAGTTCACTGACAATTGTCTCGCTAAGGTGTTAAAGATCTCATATGTCTAG 978 0.3906 MASYWLLAFMKDFSSGHPNSFINNLVLKYGQTGIYKTHLYGNPSIIICESQMCRRVLTDDVNFKNGNPKSIKRLVRISSSIDDVSSAERRRFRRLVIAPLMGHNALAMYLECIENIMVNSLEELSSMKNPVEFLKEMKKISFKVIMHVFMGCSYNEHINTKIGSSFTNIYNGLFSIPINAPGFTFHKALKVINETLRCTNIAFATFREATTDVNINDYIIPKGWRVLVWLRAIHMNPEYHPNPEEFNPSRWDDYNAKARTFLPFGAGSRLCPGSDLAKLEIFVFLHYFLLNYKLERLNPECPVTSLPSPKFTDNCLAKVLKISYV. 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10416 325 PRINTS P450 superfamily signature 271 282 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca3g10416 325 PRINTS P450 superfamily signature 190 201 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca3g10416 325 PRINTS P450 superfamily signature 262 271 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca3g10416 325 SUPERFAMILY Cytochrome P450 5 301 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca3g10416 325 Gene3D Cytochrome P450 188 313 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca3g10416 325 Gene3D Cytochrome P450 3 187 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca3g10416 325 PRINTS E-class P450 group I signature 261 271 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca3g10416 325 PRINTS E-class P450 group I signature 229 253 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca3g10416 325 PRINTS E-class P450 group I signature 271 294 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca3g10416 325 PANTHER CYTOCHROME P450 26 190 302 - -
Seca3g10416 325 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 264 273 IPR017972 GO:0005506|GO:0016705
Seca3g10416 325 Pfam Cytochrome P450 5 164 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca3g10416 325 Pfam Cytochrome P450 190 307 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10416 Seca-Chr3 249139803 249143281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10416 190 321 Cytochrome P450 AT2G32440 57.576 2.79e-53 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10416 K04123 - cpap:110806992 275.018