Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10414 ATGGCAATGAATCAACACATTCTGGGTTTCACTGGTTCCACAAATGAAGTTCGGTTGAGGAATCAATCTTTACCAATTTTGCGGGATCAGAGATTTGCTGCTGGACCCAGATTTGAAAATTCCTTCTTTGAGCAAAGTAGGAAATTTGATCATCTTCAGTCTGATCCAGTATCTGCTAATACACCTTCATCCTCTACTGTTACCCATGAGGAGCATTCTCCAGAGGATTGTGATTTTTCTGATGCAATTTTGAGTTACATCAGTCAGATCCTTATGGAAGAAGACATGGAAGACAAGACATGCATGCTTCAAGATTCTTTAGATCTTCAAGCAGCTGAGAAATCTTTCTATGATGTGCTGGGTAAAAAGTACCCACCCTCACCAATACGAAATCCAAGTTTTATCAATCAAAATGATGGGGTAGGAGGTAATAACTTGTCTATAAATTATGGTAATTGTCCTAGGACTAATGGTGATCTCAGCAGCATTTTTACTAATAACTTTTTGCTCCCAAACTCAGTTGACTTTCCTCAACAAAGTCTTCAAGGCAATAGTATTTTGCAATCAACTTATAGCCCTTCCAATAGTGTAATAAGTAGTGTGGAAGGGCCTGTAGACTCTCCAAACAGTTTTCCTCATGTTCCTGATCTGAGCAGTGAGAGTCAATCCATTTGGCAATTTCAAAAGGGTGTTGAGGAGGCTAGTAAGTTTCTTCCTAGTGGAAATGGGCTGTTTTCTAATTTGCCACCACTAGGGCCAAAAGTGGGAATGGATGCATTGTCAGTTAAGGTGGAGAAGGATGAGGAAGAATGTGTTCTTGGTGGATCCACTGGAAGGAAGCATCCTCACAGGGAAGAGGGAGATGTTGAAGAAAATAGAAGCAGCAAGCAAGCAGCAATCTATTCTGAACCAACATTGCGGTCAGATATGATTGATATAATTCTGCTTCATAGTGCAGGGGATGGTAAGGACCATTATGTGGCTAGACGTGAGGCTTTGCAGAATAAGACACACAAGACAACATTATCAAGTAGTCAATCAAAAGCTTCCAGTAATGGGAAGGGACGTGGTAAGAAACAAAGAGGGAAAAAGGAAGTGATTGATTTGAGAACACTTCTGGTCCTTTGTGCACAAGCTGTTGCTGCAGATGACAATAGGAATGCACATGAGTTGCTAAAGCAGATCAGGCAACACTCAAATCCTTTTGAGGATGGAAATCAGAGGCTGGCTCATATCTTTGCAGATGGTCTTGAGGCACGCTTGGCTGGTACTGGAAGCCAAATTTATAAAGGACTTGTTAGTAAAAGAAGATCAGCTGCTGATATTCTAAAAGCTTATCATCTATACCTTGCTGCATGCCCTTTTAGGAAAATTTCTAATTTTACCTCAAATGTCACTATTAGGACAGCTTCAGCAAATTCAATGAGGGTCCATGTTATAGATTTTGGTATCCTTTATGGTCTTCAGTGGCCTACTTTTATACAGAGACTTTCATGGAGGGAAGGAGGACCACCAAAGCTTCGGATTACAGGAATAGACTTTCCACAACCTGGTTTCAGACCTGCAGAGAGAGTTATAGAAACAGGACGCCGCTTGGCAGCTTATGCTGAAGCCTTTAATGTTCCATTTGAATATAATGCCATAGCAAAGAAATGGGAAACAATTCAACTTGAAGAACTCAAGATTGATAGGGATGAGTTCCTTGTTGTTACCTGTTTTTATAGAGGTAAGAACTTGCTGGATGAATCTGTAGCAGTGGACAGTCCAAGGAATAGTTTCCTCAGTTTGATTAGGAAGATCAACCCAAGTATATTCATTCATGGCATTATGAATGGGGCATTTAATGCCCCTTTCTTTGTTACCAGATTCAGGGAGGCACTGTTTCACTATTCATCACTATTTGATATGCTTGAAACTATTGTGCCTCGAGAGGACTGGGAAAGGATGCTGATTGAGAAAGAGATATTTGGGAGGGAAGCATTGAATGTTATAGCTTGTGAAGGCTGTGAAAGAGTAGAGAGACCTGAGACATATAAGCAGTGGCAAGCACGTATTTTAAGGGCAGGGTTTTTGCAACAACCTTTTGATCGCGAGACTGTGAAGATGGCAATGGAGAAAGTGAGGACTGGTTACCACAAGGATTTTGTAATTGATGAAGATAGCCAGTGGTTGTTGCAAGGTTGGAAGGGACGTATCATTTATGCCCTTTCTTGTTGGAGACCTGCATGA 2229 0.41 MAMNQHILGFTGSTNEVRLRNQSLPILRDQRFAAGPRFENSFFEQSRKFDHLQSDPVSANTPSSSTVTHEEHSPEDCDFSDAILSYISQILMEEDMEDKTCMLQDSLDLQAAEKSFYDVLGKKYPPSPIRNPSFINQNDGVGGNNLSINYGNCPRTNGDLSSIFTNNFLLPNSVDFPQQSLQGNSILQSTYSPSNSVISSVEGPVDSPNSFPHVPDLSSESQSIWQFQKGVEEASKFLPSGNGLFSNLPPLGPKVGMDALSVKVEKDEEECVLGGSTGRKHPHREEGDVEENRSSKQAAIYSEPTLRSDMIDIILLHSAGDGKDHYVARREALQNKTHKTTLSSSQSKASSNGKGRGKKQRGKKEVIDLRTLLVLCAQAVAADDNRNAHELLKQIRQHSNPFEDGNQRLAHIFADGLEARLAGTGSQIYKGLVSKRRSAADILKAYHLYLAACPFRKISNFTSNVTIRTASANSMRVHVIDFGILYGLQWPTFIQRLSWREGGPPKLRITGIDFPQPGFRPAERVIETGRRLAAYAEAFNVPFEYNAIAKKWETIQLEELKIDRDEFLVVTCFYRGKNLLDESVAVDSPRNSFLSLIRKINPSIFIHGIMNGAFNAPFFVTRFREALFHYSSLFDMLETIVPREDWERMLIEKEIFGREALNVIACEGCERVERPETYKQWQARILRAGFLQQPFDRETVKMAMEKVRTGYHKDFVIDEDSQWLLQGWKGRIIYALSCWRPA. 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10414 742 ProSiteProfiles GRAS family profile. 360 740 IPR005202 -
Seca3g10414 742 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 308 734 IPR005202 -
Seca3g10414 742 MobiDBLite consensus disorder prediction 270 301 - -
Seca3g10414 742 MobiDBLite consensus disorder prediction 198 217 - -
Seca3g10414 742 Pfam GRAS domain family 369 740 IPR005202 -
Seca3g10414 742 MobiDBLite consensus disorder prediction 337 353 - -
Seca3g10414 742 MobiDBLite consensus disorder prediction 334 363 - -
Seca3g10414 742 MobiDBLite consensus disorder prediction 51 75 - -
Seca3g10414 742 MobiDBLite consensus disorder prediction 52 68 - -
Seca3g10414 742 MobiDBLite consensus disorder prediction 270 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10414 Seca-Chr3 249107609 249111817 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10414 75 741 GRAS Transcription Factor Family AT2G37650 56.094 0.0 716
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca3g10414 GRAS 1.2e-113 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10414 - - gmx:100780785 1174.46