Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g10408 ATGGGTGCGTGCTGGAGCAGCAGGGTTAAGGCCGTGAGTCCTTCCAGTACAAGGTTCCCTTCTAGAAGCGAGAGCAGAGATGGCTATGACATCAGTTCAAATAGCAAGAGCTCATCAGCCTCCATATCCATGATTCATCGGAGTGAGGGGGAGATCTTACAATCTTCCAATTTGAAAAGCTTTAGCTACAATGAGCTAAGAACAGCCACGAGAAATTTCGCACCAGACAGTGTCTTAGGAGAGGGTGGATTTGGTTCAGTTTATAAGGGATGGATTGATGAGTATTCACTTGCTGCTACCAAGCCAGGGATGGGCATGATTGTTGCTGTGAAGAGACTTAACCAAGATGGATCCCAGGGTCACAAGGAATGGTTGGCTGAAATACACTATCTTGGGCAACTGCAGCATCCTAATCTTGTCAAGTTGATAGGCTACTGCTTAGAGAATGAGAACCGGCTTCTAGTTTATGAATTTATGCCTAAGGGCAGTGTGGAGAATCATCTGTTCAGGAGAGTATCTCATTTTCAACCACTCTCTTGGACTTTAAGATTGAAAATTGCCCTTGAAGCTGCAAGGGGTCTTGCTTTTCTCCATAACACAGAAACTAAAATCATATACCGTGACTTTAAGACAGCAAATATCCTACTTGATAATAACTACAATGCCAAACTTTCTGATTTTGGGCTAGCCAGAGATGGACCAACTGGTAGTAAGAGCCATGTTTCTACTAGGGTCATGGGAACCCATGGATATGCAGCACCAGAGTATCTAGCAACAGGTCATCTCACTACCAAGAGTGATGTATATAGTTTTGGAGTGGTTCTTTTGGAAATGTTATCAGGGAGACGTGCATTAGACAAGAACAGACCATGTGGAGAACAAGACTTAGTTCAATGGGCAAAACCTTACCTTTCAAAGAAACGAAAAGTTTTTCGTGTAATGGATGACCGTATTCAACGCCAGTATCCCCTTGATCGAGCTCAAAAGGTAGCCACACTTGCTTTTCAATGTCTTGCTGTTGATCCTAAATTCCGGCCAAATATGGATGAGGTGGTAAGAACATTGGAGAGGCTACAGGAATCAAAGGATAAGCTGAAAAATGGTGATCAGAGAGAGCACAGAGTACGTGGCTCTGGTGTTGGCCATTCCAATGGAATTGGCAAAGGAAGTGCAGTTTCTCCCAAAAGGACTGCATATCCTAGGCCTTCTCCCCTTTATGCTTAA 1224 0.4379 MGACWSSRVKAVSPSSTRFPSRSESRDGYDISSNSKSSSASISMIHRSEGEILQSSNLKSFSYNELRTATRNFAPDSVLGEGGFGSVYKGWIDEYSLAATKPGMGMIVAVKRLNQDGSQGHKEWLAEIHYLGQLQHPNLVKLIGYCLENENRLLVYEFMPKGSVENHLFRRVSHFQPLSWTLRLKIALEAARGLAFLHNTETKIIYRDFKTANILLDNNYNAKLSDFGLARDGPTGSKSHVSTRVMGTHGYAAPEYLATGHLTTKSDVYSFGVVLLEMLSGRRALDKNRPCGEQDLVQWAKPYLSKKRKVFRVMDDRIQRQYPLDRAQKVATLAFQCLAVDPKFRPNMDEVVRTLERLQESKDKLKNGDQREHRVRGSGVGHSNGIGKGSAVSPKRTAYPRPSPLYA. 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g10408 407 Gene3D Phosphorylase Kinase; domain 1 47 158 - -
Seca3g10408 407 PANTHER OS01G0588500 PROTEIN-RELATED 37 359 - -
Seca3g10408 407 Gene3D Transferase(Phosphotransferase) domain 1 159 380 - -
Seca3g10408 407 MobiDBLite consensus disorder prediction 361 407 - -
Seca3g10408 407 Coils Coil 348 368 - -
Seca3g10408 407 MobiDBLite consensus disorder prediction 361 378 - -
Seca3g10408 407 Pfam Protein tyrosine and serine/threonine kinase 77 355 IPR001245 GO:0004672|GO:0006468
Seca3g10408 407 ProSiteProfiles Protein kinase domain profile. 73 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g10408 407 MobiDBLite consensus disorder prediction 13 37 - -
Seca3g10408 407 FunFam Serine/threonine-protein kinase BIK1 39 158 - -
Seca3g10408 407 ProSitePatterns Protein kinases ATP-binding region signature. 79 111 IPR017441 GO:0005524
Seca3g10408 407 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672|GO:0006468
Seca3g10408 407 CDD STKc_IRAK 79 358 - -
Seca3g10408 407 FunFam Probable serine/threonine-protein kinase PBL8 159 374 - -
Seca3g10408 407 SUPERFAMILY Protein kinase-like (PK-like) 40 355 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g10408 Seca-Chr3 249026954 249030194 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g10408 51 363 Glycoside Hydrolase AT3G07070 48.408 1.27e-100 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Seca3g10408 PK_Tyr_Ser-Thr 2.2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g10408 - - gmx:100795058 644.039